ATAC-seq_ENCSR610AQP
ATAC-seq ENCSR610AQP [biosample_summary="Homo sapiens memory B cell male adult (40 years)"]
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| Id: | ATAC-seq/ENCSR610AQP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR610AQP [biosample_summary="Homo sapiens memory B cell male adult (40 years)"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (40 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN563GAD|/analyses/ENCAN563GAD/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: Alignment file {ENCFF458RBY|/files/ENCFF458RBY/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline has 23145584 usable fragments. According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have > 25 million usable fragments. 20-25 million is acceptable and < 15 million is not compliant. audit_warning: Alignment file {ENCFF661VAK|/files/ENCFF661VAK/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline has 21940107 usable fragments. According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have > 25 million usable fragments. 20-25 million is acceptable and < 15 million is not compliant. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF458RBY|/files/ENCFF458RBY/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.857935. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF458RBY|/files/ENCFF458RBY/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.89. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF661VAK|/files/ENCFF661VAK/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.844812. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF661VAK|/files/ENCFF661VAK/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.88. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR610AQP | float |
ATAC-seq_ENCSR610AQP |
ATAC-seq ENCSR610AQP [biosample_summary="Homo sapiens memory B cell male adult (40 years)"]
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[1.27, 48.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF888IRH.bed.gz | 3.27 MB | 59770ceecfebde3a4a15d041c95c0796 |
| ENCFF888IRH.bed.gz.dvc | 101.0 B | 7687f1eeb91044dd83b3149b6efdd9b0 |
| ENCFF888IRH.tabix.bed.gz | 952.07 KB | 13b7cfc59f202cca3028251fe8d008f5 |
| ENCFF888IRH.tabix.bed.gz.dvc | 106.0 B | 2a5f85df2442809a53a405b75e46e33f |
| ENCFF888IRH.tabix.bed.gz.tbi | 354.57 KB | 6586df6fea5ce9b84f4b6ae8630d4a1c |
| ENCFF888IRH.tabix.bed.gz.tbi.dvc | 110.0 B | 431443a60de69436908b5077c166eeb6 |
| genomic_resource.yaml | 4.45 KB | 62b7de656126de48a69ab9e5c13ecb82 |
| genomic_resource_original.yaml | 4.35 KB | 75335d60cbdb8c078be9511c439d1f4d |
| statistics/ |