ATAC-seq_ENCSR609GST
ATAC-seq ENCSR609GST [biosample_summary="Homo sapiens esophagus muscularis mucosa tissue male adult (54 years)"]
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| Id: | ATAC-seq/ENCSR609GST |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR609GST [biosample_summary="Homo sapiens esophagus muscularis mucosa tissue male adult (54 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (54 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN557MKP|/analyses/ENCAN557MKP/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN557MKP|/analyses/ENCAN557MKP/} has in progress subobject document {e1600634-d439-4178-b606-cd07b839d04d|/documents/e1600634-d439-4178-b606-cd07b839d04d/} audit_not_compliant: According to ENCODE4 standards, overlap peaks files in ATAC-seq assays processed by the uniform processing pipeline should have FRiP (fraction of reads in called peak regions) scores > 0.3. FRiP scores 0.2-0.3 are acceptable, and < 0.2 are not compliant. {ENCFF282ETP|/files/ENCFF282ETP/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has a FRiP score of 0.04. audit_not_compliant: According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have either >150k reproducible peaks in an overlap peaks file, or >70k in an IDR thresholded peaks file. 100-150k or 50-70k peaks respectively is acceptable, and <100k or <50k respectively is not compliant. File(s) {ENCFF282ETP|/files/ENCFF282ETP/} (overlap peaks) and {ENCFF272UWG|/files/ENCFF272UWG/} (IDR thresholded peaks) processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline have 56673 and 19555 peaks. audit_warning: Transcription Start Site (TSS) enrichment values for alignments to the human genome GRCh38 are concerning when < 5, acceptable between 5 and 7, and ideal when > 7. ENCODE processed file {ENCFF210KJO|/files/ENCFF210KJO/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has a TSS enrichment value of 6.501619247179108. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR609GST | float |
ATAC-seq_ENCSR609GST |
ATAC-seq ENCSR609GST [biosample_summary="Homo sapiens esophagus muscularis mucosa tissue male adult (54 years)"]
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[1.74, 27.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF282ETP.bed.gz | 1.27 MB | 989401aa300aa2114aed03e5d577577c |
| ENCFF282ETP.bed.gz.dvc | 101.0 B | 1d49800208f859c01587db9b3bc8f4d8 |
| ENCFF282ETP.tabix.bed.gz | 480.87 KB | 065572717170da28946739c0403185aa |
| ENCFF282ETP.tabix.bed.gz.dvc | 106.0 B | 5086ce2c06e2a9853d5cea217acf0d17 |
| ENCFF282ETP.tabix.bed.gz.tbi | 293.85 KB | 8856ee3da7c2b4ce7467d16a6a44b0ef |
| ENCFF282ETP.tabix.bed.gz.tbi.dvc | 110.0 B | 7f744c552c5a2437dd163e83db96499b |
| genomic_resource.yaml | 2.98 KB | f9db9311a24a68d7ab0526f234bf6a67 |
| genomic_resource_original.yaml | 2.87 KB | 920f3ef487f7022748a1b6bcb32c8b4e |
| statistics/ |