Resource

Id ATAC-seq/ENCSR605EGRcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR605EGR [biosample_summary="Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 30 minutes"]
Description
Labels
  • accession: ENCSR605EGR
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000451/
  • biosample_summary: Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 30 minutes
  • date_created: 2016-10-11T20:26:56.916996+00:00
  • date_released: 2017-01-19
  • doi: 10.17989/ENCSR605EGR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: treated with 100 ng/mL lipopolysaccharide for 30 minutes
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR605EGR float

ATAC-seq_ENCSR605EGR
ATAC-seq ENCSR605EGR [biosample_summary="Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 30 minutes"]
 HISTOGRAM FOR ATAC-seq_ENCSR605EGR [1.44, 39.4]
n
61,551,669
mean
7.75
sd
4.33

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 615516691.91% 146512
chr1 5772056 2.32% 13680
chr2 5107888 2.11% 12319
chr3 4140309 2.09% 9968
chr4 2872009 1.51% 7000
chr5 3360985 1.85% 8183
chr6 3745445 2.19% 9001
chr7 3228060 2.03% 7681
chr8 2931327 2.02% 7102
chr9 2614297 1.89% 6261
chr10 3061080 2.29% 7381
chr11 3008386 2.23% 7110
chr12 3086459 2.32% 7394
chr13 1501237 1.31% 3638
chr14 1932787 1.81% 4594
chr15 1974324 1.94% 4724
chr16 2030518 2.25% 4608
chr17 2622474 3.15% 5998
chr18 1354955 1.69% 3263
chr19 2104179 3.59% 4461
chr20 1644607 2.55% 3942
chr21 764457 1.64% 1789
chr22 1044438 2.06% 2396
chrX 1577621 1.01% 3829
chrY 71771 0.13% 190
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 146512 150 2739 420.11 346
global segment-length histogram

Files

Filename Size md5
ENCFF776QKF.bed.gz 4.75 MB 7b789419876350a9379eb2088fb1c338
ENCFF776QKF.tabix.bed.gz 1.57 MB 61d745de665a1bc00a76afc3b7fbc517
ENCFF776QKF.tabix.bed.gz.tbi 506.2 KB 13b03b69750fff19b94cd00830660a46
genomic_resource.yaml 1.59 KB 805ed28453c649f617d2b21790239240
statistics/