ATAC-seq_ENCSR604YEQ
ATAC-seq ENCSR604YEQ [biosample_summary="Homo sapiens HG02884"]
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| Id: | ATAC-seq/ENCSR604YEQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR604YEQ [biosample_summary="Homo sapiens HG02884"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN171XIN|/analyses/ENCAN171XIN/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF079OKV|/files/ENCFF079OKV/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.81723. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF079OKV|/files/ENCFF079OKV/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.86. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR604YEQ | float |
ATAC-seq_ENCSR604YEQ |
ATAC-seq ENCSR604YEQ [biosample_summary="Homo sapiens HG02884"]
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[1.51, 42.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF354WTG.bed.gz | 3.84 MB | 11ecd3a28fd6a71193c2b81fb6708c26 |
| ENCFF354WTG.bed.gz.dvc | 101.0 B | 49f4ae09073a501db224e921b0a3bf3f |
| ENCFF354WTG.tabix.bed.gz | 1.14 MB | 69c1ebb3ed2a96affa1052e5bd778a9f |
| ENCFF354WTG.tabix.bed.gz.dvc | 107.0 B | e82501b8f0fe9e15f2f44de373153014 |
| ENCFF354WTG.tabix.bed.gz.tbi | 461.36 KB | 25a66852c0cc7ba9beffadda1e2503ac |
| ENCFF354WTG.tabix.bed.gz.tbi.dvc | 110.0 B | 866f770eb250e7aa2baa6bbed0c2490e |
| genomic_resource.yaml | 2.48 KB | 0a26c37d0c66a50cc8f651fe76a48db3 |
| genomic_resource_original.yaml | 2.42 KB | 502bbe161a1e79005fe3814dcce5bd70 |
| statistics/ |