ATAC-seq_ENCSR600ZHS
ATAC-seq ENCSR600ZHS [biosample_summary="Homo sapiens left colon tissue female adult (46 years)"]
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| Id: | ATAC-seq/ENCSR600ZHS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR600ZHS [biosample_summary="Homo sapiens left colon tissue female adult (46 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (46 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN536LLP|/analyses/ENCAN536LLP/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN536LLP|/analyses/ENCAN536LLP/} has in progress subobject document {37cb3687-aebf-4f29-a324-db16a89e95cf|/documents/37cb3687-aebf-4f29-a324-db16a89e95cf/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF975WNG|/files/ENCFF975WNG/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.871893. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF975WNG|/files/ENCFF975WNG/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.89. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR600ZHS | float |
ATAC-seq_ENCSR600ZHS |
ATAC-seq ENCSR600ZHS [biosample_summary="Homo sapiens left colon tissue female adult (46 years)"]
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[1.19, 41.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF009YES.bed.gz | 6.44 MB | a942f6058a93e72297a41c7b108c6211 |
| ENCFF009YES.bed.gz.dvc | 101.0 B | 439e8e13b41d47f3db332f0af65909a5 |
| ENCFF009YES.tabix.bed.gz | 1.84 MB | b21a5df78202c31136b8361ed482a205 |
| ENCFF009YES.tabix.bed.gz.dvc | 107.0 B | 528c9a55990555737659f9cbc091ae3c |
| ENCFF009YES.tabix.bed.gz.tbi | 494.31 KB | c0e5562ddd558b611ff03a6bcaab9e9b |
| ENCFF009YES.tabix.bed.gz.tbi.dvc | 110.0 B | ed3440d5eef05831803cdab31f707c80 |
| genomic_resource.yaml | 2.78 KB | 85ec8dbf0f60180629d5a43bd7565898 |
| genomic_resource_original.yaml | 2.68 KB | 3024254a2ad403fea7f361357618e958 |
| statistics/ |