ATAC-seq_ENCSR594TMY
ATAC-seq ENCSR594TMY [biosample_summary="Homo sapiens HG03521"]
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| Id: | ATAC-seq/ENCSR594TMY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR594TMY [biosample_summary="Homo sapiens HG03521"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN406QRJ|/analyses/ENCAN406QRJ/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF129JFT|/files/ENCFF129JFT/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.704659. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF129JFT|/files/ENCFF129JFT/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.73. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR594TMY | float |
ATAC-seq_ENCSR594TMY |
ATAC-seq ENCSR594TMY [biosample_summary="Homo sapiens HG03521"]
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[1.5, 46.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF735PGH.bed.gz | 3.2 MB | 1e40dca794c72cbf99ed8113761b8d75 |
| ENCFF735PGH.bed.gz.dvc | 101.0 B | 67fe4ceac0441ba0b920138c044ca99c |
| ENCFF735PGH.tabix.bed.gz | 1002.36 KB | 5eea168cd9d7c817425b5781d7fe6012 |
| ENCFF735PGH.tabix.bed.gz.dvc | 107.0 B | 618dfe8789e4530271611f468932a6c7 |
| ENCFF735PGH.tabix.bed.gz.tbi | 433.11 KB | 2e24a6c70b987517367d0f438b709cb5 |
| ENCFF735PGH.tabix.bed.gz.tbi.dvc | 110.0 B | 1a4df7d4d0e082c611e1b825a2f77170 |
| genomic_resource.yaml | 2.49 KB | 8ec4efb6801fb65076a70ce05ad3bbdd |
| genomic_resource_original.yaml | 2.42 KB | b3c96edb85cecccfbefeb14ce1b0d0cb |
| statistics/ |