Resource
| Id | ATAC-seq/ENCSR593YFB |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary |
ATAC-seq ENCSR593YFB [biosample_summary="Homo sapiens heart left ventricle tissue female adult (42 years)"]
|
| Description |
status: released biological_replicates: Rep 1 summary: female adult (42 years) output_type: pseudoreplicated peaks audit_error: Alignment file {ENCFF283TUN|/files/ENCFF283TUN/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has 11700849 usable fragments. According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have > 25 million usable fragments. 20-25 million is acceptable and < 15 million is not compliant. audit_internal_action: Released analysis {ENCAN995AGY|/analyses/ENCAN995AGY/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF283TUN|/files/ENCFF283TUN/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.869434. audit_warning: According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have either >150k reproducible peaks in an overlap peaks file, or >70k in an IDR thresholded peaks file. 100-150k or 50-70k peaks respectively is acceptable, and <100k or <50k respectively is not compliant. File(s) {ENCFF904QPU|/files/ENCFF904QPU/} (overlap peaks) and {ENCFF830CEC|/files/ENCFF830CEC/} (IDR thresholded peaks) processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline have 113386 and 51384 peaks. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR593YFB | float |
ATAC-seq_ENCSR593YFB |
ATAC-seq ENCSR593YFB [biosample_summary="Homo sapiens heart left ventricle tissue female adult (42 years)"]
|
 |
[1.72, 30.3] |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF904QPU.bed.gz | 2.73 MB | 25bf9e37ac6f459cdf5a6a1f69ec3c82 |
| ENCFF904QPU.bed.gz.dvc | 101.0 B | 9ee8c942540e9cba63b6cf8d13fedd40 |
| ENCFF904QPU.tabix.bed.gz | 891.14 KB | d70a5ad72d0604012bac32dd0d285cbc |
| ENCFF904QPU.tabix.bed.gz.dvc | 106.0 B | 16e080334dd150a5f59e7d9030cd5044 |
| ENCFF904QPU.tabix.bed.gz.tbi | 382.15 KB | 95906c644b486fd418540617ffc11a6c |
| ENCFF904QPU.tabix.bed.gz.tbi.dvc | 110.0 B | 683aa97880e84da07cae471be0e4848f |
| genomic_resource.yaml | 3.07 KB | 38b4ed1b90a86d81af8561e54559da45 |
| statistics/ |