Resource
| Id | ATAC-seq/ENCSR593YFB |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR593YFB [biosample_summary="Homo sapiens heart left ventricle tissue female adult (42 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (42 years) output_type: pseudoreplicated peaks audit_error: Alignment file {ENCFF283TUN|/files/ENCFF283TUN/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has 11700849 usable fragments. According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have > 25 million usable fragments. 20-25 million is acceptable and < 15 million is not compliant. audit_internal_action: Released analysis {ENCAN995AGY|/analyses/ENCAN995AGY/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF283TUN|/files/ENCFF283TUN/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.869434. audit_warning: According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have either >150k reproducible peaks in an overlap peaks file, or >70k in an IDR thresholded peaks file. 100-150k or 50-70k peaks respectively is acceptable, and <100k or <50k respectively is not compliant. File(s) {ENCFF904QPU|/files/ENCFF904QPU/} (overlap peaks) and {ENCFF830CEC|/files/ENCFF830CEC/} (IDR thresholded peaks) processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline have 113386 and 51384 peaks. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR593YFB | float |
ATAC-seq_ENCSR593YFB |
ATAC-seq ENCSR593YFB [biosample_summary="Homo sapiens heart left ventricle tissue female adult (42 years)"]
|
 |
[1.72, 30.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 37927744 | 1.18% | 80781 |
| chr1 | 3702007 | 1.49% | 7743 |
| chr2 | 2904461 | 1.20% | 6341 |
| chr3 | 2433155 | 1.23% | 5355 |
| chr4 | 1567454 | 0.82% | 3455 |
| chr5 | 2027347 | 1.12% | 4446 |
| chr6 | 2110570 | 1.24% | 4573 |
| chr7 | 1877826 | 1.18% | 4067 |
| chr8 | 1630950 | 1.12% | 3598 |
| chr9 | 1616085 | 1.17% | 3417 |
| chr10 | 1915730 | 1.43% | 4153 |
| chr11 | 2020726 | 1.50% | 4239 |
| chr12 | 1839200 | 1.38% | 3856 |
| chr13 | 916882 | 0.80% | 2048 |
| chr14 | 1126877 | 1.05% | 2396 |
| chr15 | 1320844 | 1.30% | 2779 |
| chr16 | 1405313 | 1.56% | 2888 |
| chr17 | 1897570 | 2.28% | 3841 |
| chr18 | 775525 | 0.96% | 1761 |
| chr19 | 1589257 | 2.71% | 2978 |
| chr20 | 1025868 | 1.59% | 2206 |
| chr21 | 464722 | 0.99% | 1009 |
| chr22 | 863824 | 1.70% | 1787 |
| chrX | 895551 | 0.57% | 1845 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 80781 | 150 | 2303 | 469.51 | 380 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF904QPU.bed.gz | 2.73 MB | 25bf9e37ac6f459cdf5a6a1f69ec3c82 |
| ENCFF904QPU.tabix.bed.gz | 891.14 KB | d70a5ad72d0604012bac32dd0d285cbc |
| ENCFF904QPU.tabix.bed.gz.tbi | 382.15 KB | 95906c644b486fd418540617ffc11a6c |
| genomic_resource.yaml | 3.07 KB | 38b4ed1b90a86d81af8561e54559da45 |
| statistics/ |