Resource
| Id | ATAC-seq/ENCSR591PIX |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR591PIX [biosample_summary="Homo sapiens Panc1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN507JXY|/analyses/ENCAN507JXY/} has in progress subobject document {ff895ea1-62f2-4f38-9454-a7a15e118e88|/documents/ff895ea1-62f2-4f38-9454-a7a15e118e88/} audit_internal_action: Released analysis {ENCAN507JXY|/analyses/ENCAN507JXY/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF822BKT|/files/ENCFF822BKT/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.875659. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF822BKT|/files/ENCFF822BKT/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.89. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF836WDC|/files/ENCFF836WDC/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.857134. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF836WDC|/files/ENCFF836WDC/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.89. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR591PIX | float |
ATAC-seq_ENCSR591PIX |
ATAC-seq ENCSR591PIX [biosample_summary="Homo sapiens Panc1"]
|
 |
[1.26, 36.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 62425799 | 1.94% | 102460 |
| chr1 | 6282184 | 2.52% | 10181 |
| chr2 | 4861408 | 2.01% | 8107 |
| chr3 | 3588715 | 1.81% | 6020 |
| chr4 | 1862358 | 0.98% | 3093 |
| chr5 | 3244096 | 1.79% | 5441 |
| chr6 | 3786512 | 2.22% | 6238 |
| chr7 | 3856114 | 2.42% | 6553 |
| chr8 | 2063688 | 1.42% | 3448 |
| chr9 | 2155738 | 1.56% | 3449 |
| chr10 | 3427729 | 2.56% | 5791 |
| chr11 | 3938408 | 2.92% | 6429 |
| chr12 | 2996476 | 2.25% | 4931 |
| chr13 | 1016895 | 0.89% | 1633 |
| chr14 | 1545407 | 1.44% | 2490 |
| chr15 | 2323642 | 2.28% | 3778 |
| chr16 | 2415263 | 2.67% | 3929 |
| chr17 | 3488473 | 4.19% | 5619 |
| chr18 | 1122020 | 1.40% | 1926 |
| chr19 | 3125518 | 5.33% | 4912 |
| chr20 | 1883437 | 2.92% | 3061 |
| chr21 | 669912 | 1.43% | 1060 |
| chr22 | 1254399 | 2.47% | 2034 |
| chrX | 1516374 | 0.97% | 2334 |
| chrY | 1033 | <0.01% | 3 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 102460 | 150 | 3248 | 609.27 | 483 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF182SSP.bed.gz | 4.97 MB | a3c499c3fb055a084365eaf9ac8bb19f |
| ENCFF182SSP.tabix.bed.gz | 1.15 MB | 87d3ce848e8f87b83f9ef72d50ab3c0a |
| ENCFF182SSP.tabix.bed.gz.tbi | 387.22 KB | c5e50de6d605739b44f66b18b9e9e4d7 |
| genomic_resource.yaml | 3.9 KB | 32acd1cbd4edbd14087933710864cc06 |
| statistics/ |