Resource

Id ATAC-seq/ENCSR589ROMcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR589ROM [biosample_summary="Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 4 hours"]
Description
Labels
  • accession: ENCSR589ROM
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000451/
  • biosample_summary: Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 4 hours
  • date_created: 2016-10-11T20:26:58.379539+00:00
  • date_released: 2017-01-19
  • doi: 10.17989/ENCSR589ROM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: treated with 100 ng/mL lipopolysaccharide for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR589ROM float

ATAC-seq_ENCSR589ROM
ATAC-seq ENCSR589ROM [biosample_summary="Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 4 hours"]
 HISTOGRAM FOR ATAC-seq_ENCSR589ROM [1.33, 44.1]
n
64,213,668
mean
6.79
sd
3.71

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 642136682.00% 146561
chr1 6091203 2.45% 13777
chr2 5327642 2.20% 12354
chr3 4263592 2.15% 9852
chr4 2998551 1.58% 6985
chr5 3450291 1.90% 8035
chr6 3901327 2.28% 8931
chr7 3422556 2.15% 7776
chr8 3053637 2.10% 7106
chr9 2757386 1.99% 6363
chr10 3135535 2.34% 7308
chr11 3143814 2.33% 7125
chr12 3225729 2.42% 7400
chr13 1519707 1.33% 3507
chr14 2047454 1.91% 4651
chr15 2075490 2.03% 4776
chr16 2080278 2.30% 4523
chr17 2807327 3.37% 6123
chr18 1408684 1.75% 3258
chr19 2233960 3.81% 4568
chr20 1706082 2.65% 3931
chr21 821284 1.76% 1864
chr22 1101220 2.17% 2414
chrX 1573907 1.01% 3756
chrY 67012 0.12% 178
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 146561 150 2741 438.14 357
global segment-length histogram

Files

Filename Size md5
ENCFF033XTY.bed.gz 5.0 MB 2a1bcd85e829edff09c3f8443b665e7e
ENCFF033XTY.tabix.bed.gz 1.58 MB f8ebe3cc76a2d7de1c4ef825bdebafb5
ENCFF033XTY.tabix.bed.gz.tbi 489.54 KB cf5d403a5fa29c4b64badfa6b33bf954
genomic_resource.yaml 1.58 KB 783b8cd4fedefee286d73535e0b3e99d
statistics/