ATAC-seq_ENCSR587TRP
ATAC-seq ENCSR587TRP [biosample_summary="Homo sapiens SK-N-SH treated with 6 \u03BC\ M all-trans-retinoic acid for 48 hours"]
×
| Id: | ATAC-seq/ENCSR587TRP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR587TRP [biosample_summary="Homo sapiens SK-N-SH treated with 6 \u03BC\ M all-trans-retinoic acid for 48 hours"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2, Rep 3 summary: treated with 6 μM all-trans-retinoic acid for 48 hours output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN752KCW|/analyses/ENCAN752KCW/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN752KCW|/analyses/ENCAN752KCW/} has in progress subobject document {4b73c5ee-3525-4422-85bb-2df42d4f53a6|/documents/4b73c5ee-3525-4422-85bb-2df42d4f53a6/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF049RWL|/files/ENCFF049RWL/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.874478. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF049RWL|/files/ENCFF049RWL/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.88. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF270AGJ|/files/ENCFF270AGJ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.874897. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF270AGJ|/files/ENCFF270AGJ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.88. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF502IYP|/files/ENCFF502IYP/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.870587. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF502IYP|/files/ENCFF502IYP/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.88. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR587TRP | float |
ATAC-seq_ENCSR587TRP |
ATAC-seq ENCSR587TRP [biosample_summary="Homo sapiens SK-N-SH treated with 6 \u03BC\ M all-trans-retinoic acid for 48 hours"]
|
|
[1.26, 40.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF716JUM.bed.gz | 6.82 MB | a94091f4d35bdcbb5ce551fad645f0fd |
| ENCFF716JUM.bed.gz.dvc | 101.0 B | a481b6190cbce2a6d795e64fc98bf2ec |
| ENCFF716JUM.tabix.bed.gz | 1.64 MB | bec81a3975e73483077ba9d0ad7df2c6 |
| ENCFF716JUM.tabix.bed.gz.dvc | 107.0 B | cd699fdde328dfde9e3b768982ca82e8 |
| ENCFF716JUM.tabix.bed.gz.tbi | 491.12 KB | 197d46ca5516b1622c4d4c55a058e6ff |
| ENCFF716JUM.tabix.bed.gz.tbi.dvc | 110.0 B | c0dbae31044ca5fc26f459d79f0add85 |
| genomic_resource.yaml | 5.43 KB | a7c4dd4bb94ed0cd4441001885a80908 |
| genomic_resource_original.yaml | 5.31 KB | 868c23b4491eb90b908ed806e35ee25d |
| statistics/ |