ATAC-seq_ENCSR580JBA
ATAC-seq ENCSR580JBA [biosample_summary="Homo sapiens GM18868"]
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| Id: | ATAC-seq/ENCSR580JBA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR580JBA [biosample_summary="Homo sapiens GM18868"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN349GYU|/analyses/ENCAN349GYU/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF138ZQZ|/files/ENCFF138ZQZ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.818968. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF138ZQZ|/files/ENCFF138ZQZ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.82. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR580JBA | float |
ATAC-seq_ENCSR580JBA |
ATAC-seq ENCSR580JBA [biosample_summary="Homo sapiens GM18868"]
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[1.46, 47.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF755FSW.bed.gz | 5.44 MB | 66c492fe9d0fad1456135510714f0ffb |
| ENCFF755FSW.bed.gz.dvc | 101.0 B | 59290715b85412b63e7a50445efe735b |
| ENCFF755FSW.tabix.bed.gz | 1.6 MB | 093cdd3469438d2bd54fdc04fd14105e |
| ENCFF755FSW.tabix.bed.gz.dvc | 107.0 B | 3fb63408d386fdb2d0244db8d4b196db |
| ENCFF755FSW.tabix.bed.gz.tbi | 554.76 KB | cd481024cae1e62b61740293a8d88b3f |
| ENCFF755FSW.tabix.bed.gz.tbi.dvc | 110.0 B | 87263b4edcde7ba00007297eff4c6137 |
| genomic_resource.yaml | 2.49 KB | 000a96fa5f4c6b26e5aeef83d8e53f3f |
| genomic_resource_original.yaml | 2.42 KB | e9a72020c057c5aeff8a3bfda433df93 |
| statistics/ |