Resource

Id ATAC-seq/ENCSR565DSDcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR565DSD [biosample_summary="Homo sapiens fallopian tube tissue female adult (61 years)"]
Description
Labels
  • accession: ENCSR565DSD
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0003889/
  • biosample_summary: Homo sapiens fallopian tube tissue female adult (61 years)
  • date_created: 2019-06-02T11:43:24.142961+00:00
  • date_released: 2022-06-16
  • doi: 10.17989/ENCSR565DSD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (61 years)
  • status: released
  • submitter_comment: Despite lower enrichment scores and peaks, sequence-based predictive models (neural networks) fit to these data reveal useful motifs and motif annotations. Given the value of these rare samples, we release them with an enrichment QC warning indicating that these data likely have lower sensitivity for detecting accessible regulatory elements.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR565DSD float

ATAC-seq_ENCSR565DSD
ATAC-seq ENCSR565DSD [biosample_summary="Homo sapiens fallopian tube tissue female adult (61 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR565DSD [1.47, 25.8]
n
65,684,117
mean
3.63
sd
1.69

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 656841172.04% 117355
chr1 6144251 2.47% 10760
chr2 5096318 2.10% 9432
chr3 3865768 1.95% 7210
chr4 2831766 1.49% 5350
chr5 3305693 1.82% 6183
chr6 3716565 2.18% 6823
chr7 3375137 2.12% 6126
chr8 2827531 1.95% 5217
chr9 2824575 2.04% 4964
chr10 3084428 2.31% 5665
chr11 3428383 2.54% 5992
chr12 3041817 2.28% 5474
chr13 1607479 1.41% 3043
chr14 2186123 2.04% 3840
chr15 2264678 2.22% 4080
chr16 2394029 2.65% 4058
chr17 3270034 3.93% 5417
chr18 1416748 1.76% 2707
chr19 2850027 4.86% 4305
chr20 1876195 2.91% 3402
chr21 1001550 2.14% 1796
chr22 1568099 3.09% 2631
chrX 1702578 1.09% 2862
chrY 4345 0.01% 18
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 117355 150 2932 559.7 452
global segment-length histogram

Files

Filename Size md5
ENCFF940NOS.bed.gz 4.17 MB 92de4b979d72549ac75d9db5223117ea
ENCFF940NOS.tabix.bed.gz 1.27 MB f07ca5be22ace6177bce8acecb4312fa
ENCFF940NOS.tabix.bed.gz.tbi 478.09 KB 44add48c5f45ff160dca9b8f868e15e2
genomic_resource.yaml 2.19 KB 05ab9edbc89ea89faeed5f4241bff146
statistics/