Resource
| Id | ATAC-seq/ENCSR563ZNI |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR563ZNI [biosample_summary="Homo sapiens heart right ventricle tissue male adult (61 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (61 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN997KUF|/analyses/ENCAN997KUF/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN997KUF|/analyses/ENCAN997KUF/} has in progress subobject document {df54c1d7-9744-491f-9d23-3c09ef1442c3|/documents/df54c1d7-9744-491f-9d23-3c09ef1442c3/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF352HQI|/files/ENCFF352HQI/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.792864. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF352HQI|/files/ENCFF352HQI/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.88. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR563ZNI | float |
ATAC-seq_ENCSR563ZNI |
ATAC-seq ENCSR563ZNI [biosample_summary="Homo sapiens heart right ventricle tissue male adult (61 years)"]
|
 |
[1.31, 41.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 83058726 | 2.58% | 151238 |
| chr1 | 8061904 | 3.24% | 14517 |
| chr2 | 6673211 | 2.76% | 12409 |
| chr3 | 5444212 | 2.75% | 10233 |
| chr4 | 3615591 | 1.90% | 6902 |
| chr5 | 4513310 | 2.49% | 8480 |
| chr6 | 4826136 | 2.83% | 9014 |
| chr7 | 4195331 | 2.63% | 7802 |
| chr8 | 3696747 | 2.55% | 6920 |
| chr9 | 3606008 | 2.61% | 6485 |
| chr10 | 4250628 | 3.18% | 7887 |
| chr11 | 4240644 | 3.14% | 7453 |
| chr12 | 3958203 | 2.97% | 7138 |
| chr13 | 2079979 | 1.82% | 3935 |
| chr14 | 2539569 | 2.37% | 4582 |
| chr15 | 2970537 | 2.91% | 5358 |
| chr16 | 2939968 | 3.25% | 5134 |
| chr17 | 3792964 | 4.56% | 6453 |
| chr18 | 1826750 | 2.27% | 3547 |
| chr19 | 2849149 | 4.86% | 4507 |
| chr20 | 2247480 | 3.49% | 4071 |
| chr21 | 1056471 | 2.26% | 1888 |
| chr22 | 1875527 | 3.69% | 3264 |
| chrX | 1705813 | 1.09% | 3054 |
| chrY | 92594 | 0.16% | 205 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 151238 | 150 | 3080 | 549.19 | 440 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF012BKZ.bed.gz | 5.73 MB | 31ffb0e0bf7d32bdf75221d8cf47b1cc |
| ENCFF012BKZ.tabix.bed.gz | 1.65 MB | 58b0702af616c1cf01dc4818221a9f19 |
| ENCFF012BKZ.tabix.bed.gz.tbi | 483.95 KB | 2eeec440811be82e8c61d3314041a170 |
| genomic_resource.yaml | 2.8 KB | d0f3bc188f07dcc776834facd0576103 |
| statistics/ |