| Id: | ATAC-seq/ENCSR558ZSN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR558ZSN [biosample_summary="Homo sapiens activated T-cell female adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours output_type: replicated peaks audit_internal_action: Released analysis {ENCAN936YOF|/analyses/ENCAN936YOF/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF218OSF|/files/ENCFF218OSF/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.883735. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF287DFF|/files/ENCFF287DFF/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.882192. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF287DFF|/files/ENCFF287DFF/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.90. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR558ZSN | float |
ATAC-seq_ENCSR558ZSN |
ATAC-seq ENCSR558ZSN [biosample_summary="Homo sapiens activated T-cell female adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours"]
|
 |
[1.17, 47.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF381CVI.bed.gz | 4.09 MB | 12e1d8e90e28f56dcef0951d6851b72c |
| ENCFF381CVI.bed.gz.dvc | 101.0 B | c8dae5504372133afbe1ef7acad05ef9 |
| ENCFF381CVI.tabix.bed.gz | 1.08 MB | e5be6b50b98b60c251ad31082bc88167 |
| ENCFF381CVI.tabix.bed.gz.dvc | 107.0 B | da425a74c7e705b502c33ce37f5bc91d |
| ENCFF381CVI.tabix.bed.gz.tbi | 388.5 KB | 3f58fcc5da87bb04f1b59487efbb7a8c |
| ENCFF381CVI.tabix.bed.gz.tbi.dvc | 110.0 B | bb49da91f696e4c1cebe3ab768f23739 |
| genomic_resource.yaml | 3.59 KB | 76d16ab6621b90394779e687ae2fc7f4 |
| genomic_resource_original.yaml | 3.4 KB | f4335ef22c9a078262d08f95553f04fc |
| statistics/ |