ATAC-seq_ENCSR554WGQ
ATAC-seq ENCSR554WGQ [biosample_summary="Homo sapiens HG03280"]
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| Id: | ATAC-seq/ENCSR554WGQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR554WGQ [biosample_summary="Homo sapiens HG03280"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN708FCI|/analyses/ENCAN708FCI/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF588QWF|/files/ENCFF588QWF/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.847084. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF588QWF|/files/ENCFF588QWF/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.86. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR554WGQ | float |
ATAC-seq_ENCSR554WGQ |
ATAC-seq ENCSR554WGQ [biosample_summary="Homo sapiens HG03280"]
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[1.45, 42.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF817JLB.bed.gz | 3.59 MB | 1a10cc71363137dc82834feb746909be |
| ENCFF817JLB.bed.gz.dvc | 101.0 B | d1ffeb2719c75f02e618d39997aed3a5 |
| ENCFF817JLB.tabix.bed.gz | 1.02 MB | cd19968506a8c8bf57d9cd14ffda75d7 |
| ENCFF817JLB.tabix.bed.gz.dvc | 107.0 B | 2a896091d776fcf58fd4a1a407059deb |
| ENCFF817JLB.tabix.bed.gz.tbi | 438.73 KB | 115316c3d19d5f4d566802e089234351 |
| ENCFF817JLB.tabix.bed.gz.tbi.dvc | 110.0 B | 9a59cffef66ce9d880dac5674c371a08 |
| genomic_resource.yaml | 2.49 KB | dee5c51b6a6af2d00d950e3d5e09b278 |
| genomic_resource_original.yaml | 2.42 KB | 5113dfe79a64b117d6737bc816314b4c |
| statistics/ |