ATAC-seq_ENCSR553LAZ
ATAC-seq ENCSR553LAZ [biosample_summary="Homo sapiens adrenal gland tissue female child (16 years)"]
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| Id: | ATAC-seq/ENCSR553LAZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR553LAZ [biosample_summary="Homo sapiens adrenal gland tissue female child (16 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female child (16 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN797SQR|/analyses/ENCAN797SQR/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF670ESU|/files/ENCFF670ESU/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.839232. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF670ESU|/files/ENCFF670ESU/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.87. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR553LAZ | float |
ATAC-seq_ENCSR553LAZ |
ATAC-seq ENCSR553LAZ [biosample_summary="Homo sapiens adrenal gland tissue female child (16 years)"]
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[1.23, 42.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF994UIF.bed.gz | 6.71 MB | e1f9b3d65063266c907feb5f63e8d6d5 |
| ENCFF994UIF.bed.gz.dvc | 101.0 B | 0c7caa882837c6d2b0f5c16bfdb26556 |
| ENCFF994UIF.tabix.bed.gz | 1.86 MB | 23c39311af5bebf721753e7f88fa44af |
| ENCFF994UIF.tabix.bed.gz.dvc | 107.0 B | 543a915149015a5a683099566356a34f |
| ENCFF994UIF.tabix.bed.gz.tbi | 522.48 KB | 9a1a4a46a8e1323e7b159aa0fc395769 |
| ENCFF994UIF.tabix.bed.gz.tbi.dvc | 110.0 B | 524256b81e69e3a783c6759c8fef6a9c |
| genomic_resource.yaml | 2.58 KB | 2424c997a654ae5b12c49eefd25cb432 |
| genomic_resource_original.yaml | 2.48 KB | d0a0221f26cc63b9d4c1ccb494e8706e |
| statistics/ |