Resource
| Id | ATAC-seq/ENCSR553LAZ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR553LAZ [biosample_summary="Homo sapiens adrenal gland tissue female child (16 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female child (16 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN797SQR|/analyses/ENCAN797SQR/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF670ESU|/files/ENCFF670ESU/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.839232. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF670ESU|/files/ENCFF670ESU/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.87. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR553LAZ | float |
ATAC-seq_ENCSR553LAZ |
ATAC-seq ENCSR553LAZ [biosample_summary="Homo sapiens adrenal gland tissue female child (16 years)"]
|
 |
[1.23, 42.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 105640918 | 3.28% | 169424 |
| chr1 | 10128680 | 4.07% | 16022 |
| chr2 | 8430565 | 3.48% | 13852 |
| chr3 | 6788711 | 3.42% | 11331 |
| chr4 | 4522217 | 2.38% | 7780 |
| chr5 | 5517037 | 3.04% | 9281 |
| chr6 | 5795708 | 3.39% | 9543 |
| chr7 | 5533176 | 3.47% | 8951 |
| chr8 | 4643523 | 3.20% | 7649 |
| chr9 | 4646579 | 3.36% | 7350 |
| chr10 | 5299266 | 3.96% | 8643 |
| chr11 | 5458386 | 4.04% | 8571 |
| chr12 | 5201393 | 3.90% | 8370 |
| chr13 | 2624123 | 2.29% | 4390 |
| chr14 | 3304941 | 3.09% | 5284 |
| chr15 | 3539210 | 3.47% | 5588 |
| chr16 | 3684176 | 4.08% | 5552 |
| chr17 | 4982110 | 5.98% | 7386 |
| chr18 | 2227203 | 2.77% | 3762 |
| chr19 | 3922043 | 6.69% | 5368 |
| chr20 | 2913585 | 4.52% | 4604 |
| chr21 | 1376280 | 2.95% | 2115 |
| chr22 | 2359954 | 4.64% | 3447 |
| chrX | 2741157 | 1.76% | 4581 |
| chrY | 895 | <0.01% | 4 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 169424 | 150 | 5283 | 623.53 | 487 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF994UIF.bed.gz | 6.71 MB | e1f9b3d65063266c907feb5f63e8d6d5 |
| ENCFF994UIF.tabix.bed.gz | 1.86 MB | 23c39311af5bebf721753e7f88fa44af |
| ENCFF994UIF.tabix.bed.gz.tbi | 522.48 KB | 9a1a4a46a8e1323e7b159aa0fc395769 |
| genomic_resource.yaml | 2.58 KB | 2424c997a654ae5b12c49eefd25cb432 |
| statistics/ |