Resource

Id ATAC-seq/ENCSR552QUAcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR552QUA [biosample_summary="Homo sapiens posterior vena cava tissue female adult (47 years)"]
Description
Labels
  • accession: ENCSR552QUA
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001072/
  • biosample_summary: Homo sapiens posterior vena cava tissue female adult (47 years)
  • date_created: 2019-05-29T09:44:20.508838+00:00
  • date_released: 2020-08-05
  • doi: 10.17989/ENCSR552QUA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (47 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR552QUA float

ATAC-seq_ENCSR552QUA
ATAC-seq ENCSR552QUA [biosample_summary="Homo sapiens posterior vena cava tissue female adult (47 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR552QUA [1.27, 26.3]
n
93,799,616
mean
4.35
sd
2.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 937996162.92% 145218
chr1 8840937 3.55% 13473
chr2 7532836 3.11% 11930
chr3 6077400 3.06% 9692
chr4 4028735 2.12% 6590
chr5 5038573 2.78% 8099
chr6 5267834 3.08% 8331
chr7 4830666 3.03% 7620
chr8 4136982 2.85% 6663
chr9 4312815 3.12% 6628
chr10 4842551 3.62% 7582
chr11 4728523 3.50% 7156
chr12 4615327 3.46% 7148
chr13 2352403 2.06% 3761
chr14 2951113 2.76% 4580
chr15 3229990 3.17% 4912
chr16 3227613 3.57% 4703
chr17 4316904 5.19% 6223
chr18 1994358 2.48% 3239
chr19 3300099 5.63% 4399
chr20 2619388 4.06% 4040
chr21 1275428 2.73% 1942
chr22 1915780 3.77% 2808
chrX 2362653 1.51% 3696
chrY 708 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 145218 150 4359 645.92 523
global segment-length histogram

Files

Filename Size md5
ENCFF130ZCZ.bed.gz 5.88 MB 64485a7b4b8918f600812ada0c7ad505
ENCFF130ZCZ.tabix.bed.gz 1.6 MB c5e6027e85d1c03f1ca7a8193f3c6862
ENCFF130ZCZ.tabix.bed.gz.tbi 485.09 KB a70c59cd69b9235138c816dbbe00f9d0
genomic_resource.yaml 1.65 KB 28fc3392c36b0218980895314819db5a
statistics/