ATAC-seq_ENCSR551CSY
ATAC-seq ENCSR551CSY [biosample_summary="Homo sapiens mesenteric fat pad tissue male adult (26 years)"]
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| Id: | ATAC-seq/ENCSR551CSY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR551CSY [biosample_summary="Homo sapiens mesenteric fat pad tissue male adult (26 years)"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (26 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN223IMF|/analyses/ENCAN223IMF/} has in progress subobject document {73c67af5-439f-49af-b75e-2e47d63e7c88|/documents/73c67af5-439f-49af-b75e-2e47d63e7c88/} audit_internal_action: Released analysis {ENCAN223IMF|/analyses/ENCAN223IMF/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF755SIZ|/files/ENCFF755SIZ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.836721. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF755SIZ|/files/ENCFF755SIZ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.84. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR551CSY | float |
ATAC-seq_ENCSR551CSY |
ATAC-seq ENCSR551CSY [biosample_summary="Homo sapiens mesenteric fat pad tissue male adult (26 years)"]
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[1.33, 37.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF168WTX.bed.gz | 5.49 MB | 6a1161064f1b540f95a930083a7fdef7 |
| ENCFF168WTX.bed.gz.dvc | 101.0 B | 0cb72da16a25aa1ecbd83bc5279612bc |
| ENCFF168WTX.tabix.bed.gz | 1.6 MB | 7d766b724e6fe1ff0e42e12a854b50b0 |
| ENCFF168WTX.tabix.bed.gz.dvc | 107.0 B | df2afbd3e828d5333613d9c4c9fee4c7 |
| ENCFF168WTX.tabix.bed.gz.tbi | 503.98 KB | 7b6909c48e0bd91becaa40f627f703de |
| ENCFF168WTX.tabix.bed.gz.tbi.dvc | 110.0 B | 3efb0620aeea9bb80c00f96c4dccad14 |
| genomic_resource.yaml | 2.8 KB | 68f5c36c015318ca13aa36c4d1592c1b |
| genomic_resource_original.yaml | 2.69 KB | 275824301b965c5fa5c8b108ef5172bf |
| statistics/ |