Resource

Id ATAC-seq/ENCSR548SSPcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR548SSP [biosample_summary="Homo sapiens mucosa of urinary bladder tissue female adult (47 years)"]
Description
Labels
  • accession: ENCSR548SSP
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001259/
  • biosample_summary: Homo sapiens mucosa of urinary bladder tissue female adult (47 years)
  • date_created: 2019-05-29T09:20:58.166780+00:00
  • date_released: 2022-06-16
  • doi: 10.17989/ENCSR548SSP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (47 years)
  • status: released
  • submitter_comment: Despite lower enrichment scores and peaks, sequence-based predictive models (neural networks) fit to these data reveal useful motifs and motif annotations. Given the value of these rare samples, we release them with an enrichment QC warning indicating that these data likely have lower sensitivity for detecting accessible regulatory elements.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR548SSP float

ATAC-seq_ENCSR548SSP
ATAC-seq ENCSR548SSP [biosample_summary="Homo sapiens mucosa of urinary bladder tissue female adult (47 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR548SSP [1.4, 26.8]
n
60,121,244
mean
4.17
sd
2.17

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 601212441.87% 110510
chr1 5707216 2.29% 10292
chr2 4739734 1.96% 8862
chr3 3689931 1.86% 6963
chr4 2850172 1.50% 5580
chr5 3117768 1.72% 5936
chr6 3523863 2.06% 6605
chr7 3196129 2.01% 5983
chr8 2797117 1.93% 5374
chr9 2637550 1.91% 4816
chr10 2820531 2.11% 5327
chr11 3150088 2.33% 5663
chr12 2722569 2.04% 4982
chr13 1530993 1.34% 2963
chr14 1880261 1.76% 3498
chr15 1881000 1.84% 3366
chr16 2143721 2.37% 3761
chr17 2823997 3.39% 4753
chr18 1363077 1.70% 2717
chr19 2398386 4.09% 3827
chr20 1547853 2.40% 2902
chr21 918428 1.97% 1670
chr22 1293124 2.54% 2232
chrX 1385207 0.89% 2427
chrY 2529 <0.01% 11
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 110510 150 3348 544.03 430
global segment-length histogram

Files

Filename Size md5
ENCFF037LDD.bed.gz 3.99 MB 6fe21ea2f9f2bc170430ff61549db8e2
ENCFF037LDD.tabix.bed.gz 1.19 MB d946bf64522bc782520b5c4f6c3aba08
ENCFF037LDD.tabix.bed.gz.tbi 472.48 KB 69761cb6b9c9ae39c14fb76feae03134
genomic_resource.yaml 2.23 KB b2d5b20c3c2fa5c9f7db8bbdbdcd361e
statistics/