Resource

Id ATAC-seq/ENCSR548KILcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR548KIL [biosample_summary="Homo sapiens adrenal gland tissue male adult (37 years)"]
Description
Labels
  • accession: ENCSR548KIL
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002369/
  • biosample_summary: Homo sapiens adrenal gland tissue male adult (37 years)
  • date_created: 2016-11-01T00:51:48.990288+00:00
  • date_released: 2016-10-31
  • doi: 10.17989/ENCSR548KIL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (37 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR548KIL float

ATAC-seq_ENCSR548KIL
ATAC-seq ENCSR548KIL [biosample_summary="Homo sapiens adrenal gland tissue male adult (37 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR548KIL [1.41, 33.3]
n
53,844,318
mean
6.32
sd
3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 538443181.67% 117572
chr1 5198922 2.09% 11172
chr2 4307509 1.78% 9591
chr3 3450389 1.74% 7811
chr4 2316488 1.22% 5368
chr5 2806837 1.55% 6358
chr6 3075796 1.80% 6781
chr7 2774478 1.74% 6106
chr8 2383125 1.64% 5310
chr9 2411469 1.74% 5260
chr10 2665960 1.99% 5995
chr11 2779481 2.06% 5989
chr12 2679511 2.01% 5781
chr13 1253781 1.10% 2880
chr14 1698050 1.59% 3658
chr15 1753762 1.72% 3831
chr16 1950249 2.16% 4003
chr17 2537657 3.05% 5210
chr18 1151218 1.43% 2616
chr19 2081936 3.55% 3894
chr20 1423160 2.21% 3128
chr21 655993 1.40% 1441
chr22 1142341 2.25% 2391
chrX 1287586 0.83% 2856
chrY 58620 0.10% 142
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 117572 150 2678 457.97 363
global segment-length histogram

Files

Filename Size md5
ENCFF141QUY.bed.gz 4.09 MB 9312124721e8ca80bb551f962b6295a3
ENCFF141QUY.tabix.bed.gz 1.26 MB dd68ffb299b44539330e04ce83cbda03
ENCFF141QUY.tabix.bed.gz.tbi 473.3 KB 7772a14ad55cb6e7f834bc92ab4872a6
genomic_resource.yaml 2.14 KB 90824714f858d98368df47899de8d587
statistics/