Resource

Id ATAC-seq/ENCSR542RNGcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR542RNG [biosample_summary="Homo sapiens adrenal gland tissue male adult (26 years)"]
Description
Labels
  • accession: ENCSR542RNG
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002369/
  • biosample_summary: Homo sapiens adrenal gland tissue male adult (26 years)
  • date_created: 2019-05-25T19:08:00.684316+00:00
  • date_released: 2020-08-17
  • doi: 10.17989/ENCSR542RNG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (26 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR542RNG float

ATAC-seq_ENCSR542RNG
ATAC-seq ENCSR542RNG [biosample_summary="Homo sapiens adrenal gland tissue male adult (26 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR542RNG [1.29, 41]
n
107,185,111
mean
7.01
sd
4.03

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1071851113.33% 168219
chr1 10375780 4.17% 16115
chr2 8546803 3.53% 13730
chr3 6878302 3.47% 11202
chr4 4583972 2.41% 7626
chr5 5574863 3.07% 9060
chr6 5815930 3.40% 9359
chr7 5592459 3.51% 8832
chr8 4697812 3.24% 7528
chr9 4697557 3.39% 7289
chr10 5337877 3.99% 8540
chr11 5492380 4.07% 8539
chr12 5266373 3.95% 8260
chr13 2617642 2.29% 4228
chr14 3446909 3.22% 5394
chr15 3572964 3.50% 5552
chr16 3774605 4.18% 5630
chr17 5071383 6.09% 7403
chr18 2339960 2.91% 3809
chr19 3911694 6.67% 5307
chr20 2988552 4.64% 4652
chr21 1368965 2.93% 2089
chr22 2362821 4.65% 3402
chrX 2724605 1.75% 4421
chrY 144903 0.25% 252
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 168219 150 3827 637.18 523
global segment-length histogram

Files

Filename Size md5
ENCFF639FDA.bed.gz 6.66 MB 3e806188fde358d1fc03650cd534e094
ENCFF639FDA.tabix.bed.gz 1.84 MB 5b931242ec1a529d2bd8251bc62c97bf
ENCFF639FDA.tabix.bed.gz.tbi 532.81 KB 747353f2b558abc885797e79333c8ddc
genomic_resource.yaml 1.62 KB 781f82507c72a3363e7deac2a923a58d
statistics/