ATAC-seq_ENCSR541KFY
ATAC-seq ENCSR541KFY [biosample_summary="Homo sapiens WTC11"]
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| Id: | ATAC-seq/ENCSR541KFY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR541KFY [biosample_summary="Homo sapiens WTC11"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN873DEH|/analyses/ENCAN873DEH/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF240QKT|/files/ENCFF240QKT/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.78632. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF240QKT|/files/ENCFF240QKT/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.79. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF127KFG|/files/ENCFF127KFG/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.773355. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF127KFG|/files/ENCFF127KFG/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.77. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR541KFY | float |
ATAC-seq_ENCSR541KFY |
ATAC-seq ENCSR541KFY [biosample_summary="Homo sapiens WTC11"]
|
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[1.63, 40.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF321VDH.bed.gz | 6.27 MB | f177e4e3c746b32a8d764f3f0fbef540 |
| ENCFF321VDH.bed.gz.dvc | 101.0 B | ff44380558f9c51cad620a2fcf67c814 |
| ENCFF321VDH.tabix.bed.gz | 1.86 MB | 1a097e85a25a0197457f44f72e1e7f18 |
| ENCFF321VDH.tabix.bed.gz.dvc | 107.0 B | d3bf9c96733d409b6fbce71e57a310ce |
| ENCFF321VDH.tabix.bed.gz.tbi | 629.75 KB | 2a8c3c2b682f0229d19accd1929082c9 |
| ENCFF321VDH.tabix.bed.gz.tbi.dvc | 110.0 B | e0cd570c17afe4ccabd7b8179c4ed80a |
| genomic_resource.yaml | 3.68 KB | 6a0399bc5edbf378701edaad9d26343a |
| genomic_resource_original.yaml | 3.62 KB | a1cb666a4c3658b33b3a0fc91a2479fd |
| statistics/ |