Resource

Id ATAC-seq/ENCSR535NODcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR535NOD [biosample_summary="Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 2 hours"]
Description
Labels
  • accession: ENCSR535NOD
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000451/
  • biosample_summary: Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 2 hours
  • date_created: 2016-10-12T02:41:16.162560+00:00
  • date_released: 2017-01-19
  • doi: 10.17989/ENCSR535NOD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: treated with 100 ng/mL lipopolysaccharide for 2 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR535NOD float

ATAC-seq_ENCSR535NOD
ATAC-seq ENCSR535NOD [biosample_summary="Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 2 hours"]
 HISTOGRAM FOR ATAC-seq_ENCSR535NOD [1.42, 34.2]
n
49,046,922
mean
6.9
sd
3.82

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 490469221.52% 111722
chr1 4362128 1.75% 9825
chr2 4100403 1.69% 9547
chr3 3212297 1.62% 7500
chr4 2400366 1.26% 5617
chr5 2708534 1.49% 6366
chr6 2971175 1.74% 6807
chr7 2727712 1.71% 6246
chr8 2392106 1.65% 5585
chr9 2032619 1.47% 4674
chr10 2360870 1.76% 5512
chr11 2402772 1.78% 5467
chr12 2399059 1.80% 5467
chr13 1215379 1.06% 2805
chr14 1527107 1.43% 3474
chr15 1493669 1.46% 3438
chr16 1616226 1.79% 3492
chr17 1964287 2.36% 4171
chr18 1132396 1.41% 2665
chr19 1747361 2.98% 3471
chr20 1280734 1.99% 2937
chr21 631393 1.35% 1381
chr22 830667 1.63% 1797
chrX 1534168 0.98% 3464
chrY 3494 0.01% 14
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 111722 150 2766 439.01 365
global segment-length histogram

Files

Filename Size md5
ENCFF502ICB.bed.gz 3.6 MB 1dcde77c7c26f9e6941c8cb4fa527e1f
ENCFF502ICB.tabix.bed.gz 1.2 MB dc9fdd2603248ac85c8d0e53e766756b
ENCFF502ICB.tabix.bed.gz.tbi 466.25 KB e73c9443e8608beeabd6128171904b5b
genomic_resource.yaml 1.58 KB 9a92a51ee692e36148baf819ada77a72
statistics/