Resource

Id ATAC-seq/ENCSR533WFBcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR533WFB [biosample_summary="Homo sapiens sciatic nerve tissue female adult (41 years)"]
Description
Labels
  • accession: ENCSR533WFB
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001322/
  • biosample_summary: Homo sapiens sciatic nerve tissue female adult (41 years)
  • date_created: 2019-05-25T06:41:59.299805+00:00
  • date_released: 2022-06-16
  • doi: 10.17989/ENCSR533WFB
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (41 years)
  • status: released
  • submitter_comment: Despite lower enrichment scores and peaks, sequence-based predictive models (neural networks) fit to these data reveal useful motifs and motif annotations. Given the value of these rare samples, we release them with an enrichment QC warning indicating that these data likely have lower sensitivity for detecting accessible regulatory elements.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR533WFB float

ATAC-seq_ENCSR533WFB
ATAC-seq ENCSR533WFB [biosample_summary="Homo sapiens sciatic nerve tissue female adult (41 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR533WFB [1.48, 22]
n
33,747,531
mean
4.13
sd
2.11

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 337475311.05% 68130
chr1 3203056 1.29% 6277
chr2 2655996 1.10% 5524
chr3 2073828 1.05% 4293
chr4 1500977 0.79% 3270
chr5 1788040 0.98% 3815
chr6 1978535 1.16% 4090
chr7 1703611 1.07% 3553
chr8 1496854 1.03% 3169
chr9 1465625 1.06% 2952
chr10 1641895 1.23% 3360
chr11 1759821 1.30% 3455
chr12 1655035 1.24% 3329
chr13 837923 0.73% 1787
chr14 1096690 1.02% 2189
chr15 1074844 1.05% 2114
chr16 1174960 1.30% 2235
chr17 1647070 1.98% 3060
chr18 649785 0.81% 1402
chr19 1472507 2.51% 2532
chr20 857661 1.33% 1714
chr21 477447 1.02% 959
chr22 702854 1.38% 1357
chrX 829859 0.53% 1683
chrY 2658 <0.01% 11
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 68130 150 2675 495.34 408
global segment-length histogram

Files

Filename Size md5
ENCFF348VBL.bed.gz 2.45 MB 2a447010fb7d2a39a49c01da3786528a
ENCFF348VBL.tabix.bed.gz 762.99 KB 37ff54e6dfb962e827ecc9a2b7670e41
ENCFF348VBL.tabix.bed.gz.tbi 358.76 KB 4d5f05860af38e23e3165cf0b369d087
genomic_resource.yaml 2.73 KB 5cdf62c72dc3159a66e457fae4bbc926
statistics/