ATAC-seq_ENCSR530XBF
ATAC-seq ENCSR530XBF [biosample_summary="Homo sapiens pancreas tissue female child (16 years)"]
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| Id: | ATAC-seq/ENCSR530XBF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR530XBF [biosample_summary="Homo sapiens pancreas tissue female child (16 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female child (16 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN964CSW|/analyses/ENCAN964CSW/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN964CSW|/analyses/ENCAN964CSW/} has in progress subobject document {993a71f3-0822-461c-8c0e-43af51c720e0|/documents/993a71f3-0822-461c-8c0e-43af51c720e0/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF773JMT|/files/ENCFF773JMT/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.834453. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF773JMT|/files/ENCFF773JMT/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.87. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR530XBF | float |
ATAC-seq_ENCSR530XBF |
ATAC-seq ENCSR530XBF [biosample_summary="Homo sapiens pancreas tissue female child (16 years)"]
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[1.28, 48.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF029YUG.bed.gz | 6.72 MB | 4891fbf65921102204b7f7fa3d916eeb |
| ENCFF029YUG.bed.gz.dvc | 101.0 B | 71342a8b053a3f658ddd04ed8f205d20 |
| ENCFF029YUG.tabix.bed.gz | 1.87 MB | 610ca7e03df21f8566660eb2e8dc6de9 |
| ENCFF029YUG.tabix.bed.gz.dvc | 107.0 B | 39eaf6e3db948d56805209a216188019 |
| ENCFF029YUG.tabix.bed.gz.tbi | 538.57 KB | ee2d13ea8b32da8c4d4922d4a1527975 |
| ENCFF029YUG.tabix.bed.gz.tbi.dvc | 110.0 B | fae821e747fb4ee6635d7a26f2a92d3c |
| genomic_resource.yaml | 2.78 KB | 8a1a457b4c4465cf599943280b8896f0 |
| genomic_resource_original.yaml | 2.68 KB | 2cb0c32162d4fe629049f884f8105a90 |
| statistics/ |