ATAC-seq_ENCSR528YDD
ATAC-seq ENCSR528YDD [biosample_summary="Homo sapiens HG03342"]
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| Id: | ATAC-seq/ENCSR528YDD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR528YDD [biosample_summary="Homo sapiens HG03342"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN708CEW|/analyses/ENCAN708CEW/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF848NBQ|/files/ENCFF848NBQ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.893092. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF848NBQ|/files/ENCFF848NBQ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.90. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR528YDD | float |
ATAC-seq_ENCSR528YDD |
ATAC-seq ENCSR528YDD [biosample_summary="Homo sapiens HG03342"]
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[1.37, 35] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF806ZOU.bed.gz | 4.13 MB | 78065d2c6a3ea9a9170b030e95458fc9 |
| ENCFF806ZOU.bed.gz.dvc | 101.0 B | 6eb591cd0c22b12369713f0fa2961a56 |
| ENCFF806ZOU.tabix.bed.gz | 1.18 MB | a7fd0bc472e55ef713fa80e476fb81a9 |
| ENCFF806ZOU.tabix.bed.gz.dvc | 107.0 B | a3b9f62a94007b8c541c03809bcddb70 |
| ENCFF806ZOU.tabix.bed.gz.tbi | 468.88 KB | 9a34c8df7b7e278a394865feda117140 |
| ENCFF806ZOU.tabix.bed.gz.tbi.dvc | 110.0 B | e7f11d13bdcdcc330c609d1ae2f41015 |
| genomic_resource.yaml | 2.49 KB | b8f0d284d0e6809d54313e7826719715 |
| genomic_resource_original.yaml | 2.42 KB | 954ac692ae31789e795da272343542b2 |
| statistics/ |