ATAC-seq_ENCSR524CPZ
ATAC-seq ENCSR524CPZ [biosample_summary="Homo sapiens HG02798"]
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| Id: | ATAC-seq/ENCSR524CPZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR524CPZ [biosample_summary="Homo sapiens HG02798"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN235WQK|/analyses/ENCAN235WQK/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF960AXI|/files/ENCFF960AXI/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.625936. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF960AXI|/files/ENCFF960AXI/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.70. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR524CPZ | float |
ATAC-seq_ENCSR524CPZ |
ATAC-seq ENCSR524CPZ [biosample_summary="Homo sapiens HG02798"]
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[1.41, 37.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF986ZDE.bed.gz | 4.57 MB | 90ea0ede56372f7ab6400d4db242577d |
| ENCFF986ZDE.bed.gz.dvc | 101.0 B | 54f3aedec255f3e150dcd0718e9a64bd |
| ENCFF986ZDE.tabix.bed.gz | 1.37 MB | 069b53ef451e5744d595b5a8a71eab47 |
| ENCFF986ZDE.tabix.bed.gz.dvc | 107.0 B | 6289d25747abd52786d3f44e241538ea |
| ENCFF986ZDE.tabix.bed.gz.tbi | 514.66 KB | 56c3a9c52e00c9633cc2e9ea724d7f9b |
| ENCFF986ZDE.tabix.bed.gz.tbi.dvc | 110.0 B | 3f0e7ddbc17a6e3b817da882fa02ce40 |
| genomic_resource.yaml | 2.49 KB | aebad651ca30a62c3c3e3870e3bbd017 |
| genomic_resource_original.yaml | 2.42 KB | 3bdbdc2814023e539b66a70e4f2fd870 |
| statistics/ |