ATAC-seq_ENCSR516YAD
ATAC-seq ENCSR516YAD [biosample_summary="Homo sapiens from a donor with amyotrophic lateral sclerosis; motor neuron"]
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| Id: | ATAC-seq/ENCSR516YAD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR516YAD [biosample_summary="Homo sapiens from a donor with amyotrophic lateral sclerosis; motor neuron"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (47 years) with amyotrophic lateral sclerosis output_type: replicated peaks audit_internal_action: Released analysis {ENCAN366NCA|/analyses/ENCAN366NCA/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF884SWM|/files/ENCFF884SWM/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with NRF value of 0.753647. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF884SWM|/files/ENCFF884SWM/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.76. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF367KMY|/files/ENCFF367KMY/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with NRF value of 0.757748. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF367KMY|/files/ENCFF367KMY/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.77. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR516YAD | float |
ATAC-seq_ENCSR516YAD |
ATAC-seq ENCSR516YAD [biosample_summary="Homo sapiens from a donor with amyotrophic lateral sclerosis; motor neuron"]
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[1.21, 41.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF415HUA.bed.gz | 4.98 MB | f01a69dbbe27fdcc9cfa9ae72666f475 |
| ENCFF415HUA.bed.gz.dvc | 101.0 B | d20a7368b1ae8976dfafa6a7d7e8a3bc |
| ENCFF415HUA.tabix.bed.gz | 1.38 MB | 8ac8c9134e610c50d10291d078988c5f |
| ENCFF415HUA.tabix.bed.gz.dvc | 107.0 B | c720e66af0ce67ccf560e45b6ceec181 |
| ENCFF415HUA.tabix.bed.gz.tbi | 491.85 KB | 69a07e35937570c3fa10ab51265a721a |
| ENCFF415HUA.tabix.bed.gz.tbi.dvc | 110.0 B | f2bebead46218d32123f6f690a012b40 |
| genomic_resource.yaml | 3.87 KB | 0bf04253597fcdaac91f1a36895cbd50 |
| genomic_resource_original.yaml | 3.75 KB | 2bf42fe8fe7f67d9da4c61ac23365026 |
| statistics/ |