Resource

Id ATAC-seq/ENCSR516CPWcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR516CPW [biosample_summary="Homo sapiens right lobe of liver tissue female adult (47 years)"]
Description
Labels
  • accession: ENCSR516CPW
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001114/
  • biosample_summary: Homo sapiens right lobe of liver tissue female adult (47 years)
  • date_created: 2019-07-30T08:02:43.772215+00:00
  • date_released: 2020-08-05
  • doi: 10.17989/ENCSR516CPW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (47 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR516CPW float

ATAC-seq_ENCSR516CPW
ATAC-seq ENCSR516CPW [biosample_summary="Homo sapiens right lobe of liver tissue female adult (47 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR516CPW [1.29, 41.1]
n
94,646,371
mean
5.6
sd
3.41

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 946463712.94% 158649
chr1 8797616 3.53% 14635
chr2 7421032 3.06% 12636
chr3 5719206 2.88% 9929
chr4 4103053 2.16% 7190
chr5 4833861 2.66% 8418
chr6 5266344 3.08% 9065
chr7 5058645 3.17% 8515
chr8 4074921 2.81% 6977
chr9 4156853 3.00% 6879
chr10 4795059 3.58% 8096
chr11 4804639 3.56% 7959
chr12 4525064 3.40% 7654
chr13 2364091 2.07% 4025
chr14 3059058 2.86% 5113
chr15 3129464 3.07% 5230
chr16 3543877 3.92% 5680
chr17 4413519 5.30% 6974
chr18 2100954 2.61% 3627
chr19 3579732 6.11% 5354
chr20 2602589 4.04% 4351
chr21 1338624 2.87% 2169
chr22 2248426 4.42% 3506
chrX 2706147 1.73% 4653
chrY 3597 0.01% 14
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 158649 150 3883 596.58 494
global segment-length histogram

Files

Filename Size md5
ENCFF123FYR.bed.gz 6.11 MB 5f2bccb5ab01f11056dd5f2e1156ac2f
ENCFF123FYR.tabix.bed.gz 1.74 MB 85708cd43e12b83f4c9a98ad40d1d869
ENCFF123FYR.tabix.bed.gz.tbi 514.17 KB 5e231cc1de955166c90e4d8ffd190ee0
genomic_resource.yaml 1.65 KB 8d6b6801bb2f21c8ddffd6b8b3b82119
statistics/