ATAC-seq_ENCSR512YXO
ATAC-seq ENCSR512YXO [biosample_summary="Homo sapiens GM21381"]
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| Id: | ATAC-seq/ENCSR512YXO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR512YXO [biosample_summary="Homo sapiens GM21381"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN639YTK|/analyses/ENCAN639YTK/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF717IQY|/files/ENCFF717IQY/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.877338. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF717IQY|/files/ENCFF717IQY/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.88. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR512YXO | float |
ATAC-seq_ENCSR512YXO |
ATAC-seq ENCSR512YXO [biosample_summary="Homo sapiens GM21381"]
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[1.43, 38.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF980BJM.bed.gz | 3.72 MB | bce696f85c07a516a5c0f2625cee6826 |
| ENCFF980BJM.bed.gz.dvc | 101.0 B | a0541f880e7e564ad3679d609b988974 |
| ENCFF980BJM.tabix.bed.gz | 1.06 MB | ce79be63ce02fa3907f152c378c063ba |
| ENCFF980BJM.tabix.bed.gz.dvc | 107.0 B | 51b4b1d7ea9890073d12f51be9d2c98b |
| ENCFF980BJM.tabix.bed.gz.tbi | 431.99 KB | 81f504e122e45733a36fa2a1e7f31a8c |
| ENCFF980BJM.tabix.bed.gz.tbi.dvc | 110.0 B | 06d8244255b3ce74179596983305787c |
| genomic_resource.yaml | 2.49 KB | 8ede24714f6d2062e598bd8f8586345f |
| genomic_resource_original.yaml | 2.42 KB | 7deb045b7013dc73cdd08354778f0c6c |
| statistics/ |