ATAC-seq_ENCSR512FHU
ATAC-seq ENCSR512FHU [biosample_summary="Homo sapiens GM19023"]
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| Id: | ATAC-seq/ENCSR512FHU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR512FHU [biosample_summary="Homo sapiens GM19023"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN415WAT|/analyses/ENCAN415WAT/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF949CVL|/files/ENCFF949CVL/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.817899. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF949CVL|/files/ENCFF949CVL/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.84. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR512FHU | float |
ATAC-seq_ENCSR512FHU |
ATAC-seq ENCSR512FHU [biosample_summary="Homo sapiens GM19023"]
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[1.54, 34.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF283LXY.bed.gz | 3.71 MB | baac6361a9011e94db5f3c34eaa6cc71 |
| ENCFF283LXY.bed.gz.dvc | 101.0 B | c07f2f7da04ec6a9082c61adc7dd2bb8 |
| ENCFF283LXY.tabix.bed.gz | 1.03 MB | f8048506e7f8a7d91483d401c7845971 |
| ENCFF283LXY.tabix.bed.gz.dvc | 107.0 B | 9f6fea68252499eadc694874175384a1 |
| ENCFF283LXY.tabix.bed.gz.tbi | 441.99 KB | 3976ef7e3f27a87cb8cb6222aa201ede |
| ENCFF283LXY.tabix.bed.gz.tbi.dvc | 110.0 B | 4d09f663f4d09538a1af8a4af9a9625f |
| genomic_resource.yaml | 2.49 KB | c42c7cc09b8e4eb9cdafa49dd2420bf6 |
| genomic_resource_original.yaml | 2.42 KB | a428599d2a2496d1b4c9e6f7d0c36a45 |
| statistics/ |