ATAC-seq_ENCSR504OUW
ATAC-seq ENCSR504OUW [biosample_summary="Homo sapiens CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult (38 years)"]
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| Id: | ATAC-seq/ENCSR504OUW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR504OUW [biosample_summary="Homo sapiens CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult (38 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN633LER|/analyses/ENCAN633LER/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: Alignment file {ENCFF205TSU|/files/ENCFF205TSU/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline has 23958966 usable fragments. According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have > 25 million usable fragments. 20-25 million is acceptable and < 15 million is not compliant. audit_warning: According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have either >150k reproducible peaks in an overlap peaks file, or >70k in an IDR thresholded peaks file. 100-150k or 50-70k peaks respectively is acceptable, and <100k or <50k respectively is not compliant. File(s) {ENCFF754GUE|/files/ENCFF754GUE/} (overlap peaks) and {ENCFF284FAV|/files/ENCFF284FAV/} (IDR thresholded peaks) processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline have 86734 and 52643 peaks. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR504OUW | float |
ATAC-seq_ENCSR504OUW |
ATAC-seq ENCSR504OUW [biosample_summary="Homo sapiens CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult (38 years)"]
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[1.62, 42.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF754GUE.bed.gz | 2.12 MB | 4bc3da42fa6e6fffd18f84c5112eabb9 |
| ENCFF754GUE.bed.gz.dvc | 101.0 B | 1785c2738c054ca055942dad9bc11387 |
| ENCFF754GUE.tabix.bed.gz | 641.13 KB | f89dcf4d0bad5bf33439a1e864dcc23d |
| ENCFF754GUE.tabix.bed.gz.dvc | 106.0 B | b28f418e3e60d7dff2534b7a7be8864a |
| ENCFF754GUE.tabix.bed.gz.tbi | 281.86 KB | 6f1001f0a4b4bab0f6962f857bc8f678 |
| ENCFF754GUE.tabix.bed.gz.tbi.dvc | 110.0 B | 5a243506b327983da09f88b6c7b376b5 |
| genomic_resource.yaml | 2.44 KB | 14bfe8abd7e7ffcc6cfafd3d8cbd3234 |
| genomic_resource_original.yaml | 2.31 KB | 2af0ce454265723c35b1cc4dbaf9060a |
| statistics/ |