ATAC-seq_ENCSR499ASS
ATAC-seq ENCSR499ASS [biosample_summary="Homo sapiens PC-3"]
×
| Id: | ATAC-seq/ENCSR499ASS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR499ASS [biosample_summary="Homo sapiens PC-3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN146VQB|/analyses/ENCAN146VQB/} has in progress subobject document {63b9939d-67e9-409a-8a77-7f711c77c83d|/documents/63b9939d-67e9-409a-8a77-7f711c77c83d/} audit_internal_action: Released analysis {ENCAN146VQB|/analyses/ENCAN146VQB/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF024FNF|/files/ENCFF024FNF/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.897536. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF516GDK|/files/ENCFF516GDK/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.890324. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF516GDK|/files/ENCFF516GDK/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.89. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR499ASS | float |
ATAC-seq_ENCSR499ASS |
ATAC-seq ENCSR499ASS [biosample_summary="Homo sapiens PC-3"]
|
|
[1.42, 40.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF811MOZ.bed.gz | 6.37 MB | fa195d5fda6af1d58f51099f40661c3a |
| ENCFF811MOZ.bed.gz.dvc | 101.0 B | f6d7e5f6a02626040a953d70281b6a72 |
| ENCFF811MOZ.tabix.bed.gz | 1.83 MB | d989c9933ec4f028599b43823af03ff3 |
| ENCFF811MOZ.tabix.bed.gz.dvc | 107.0 B | d7a4249d241f0aea112e6161792ea38a |
| ENCFF811MOZ.tabix.bed.gz.tbi | 571.04 KB | 12f4053950e92c2bbd4efa08bc97bcf9 |
| ENCFF811MOZ.tabix.bed.gz.tbi.dvc | 110.0 B | 6d8d98b6b554f40309f22a0199061318 |
| genomic_resource.yaml | 3.23 KB | c444132a9ce2ca2d2adc3d6c44f3856e |
| genomic_resource_original.yaml | 3.16 KB | 276fdbf11e6a7dfa685b1bd0f0267538 |
| statistics/ |