ATAC-seq_ENCSR496PPU
ATAC-seq ENCSR496PPU [biosample_summary="Homo sapiens mucosa of descending colon tissue female adult (61 years)"]
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| Id: | ATAC-seq/ENCSR496PPU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR496PPU [biosample_summary="Homo sapiens mucosa of descending colon tissue female adult (61 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (61 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN475YCD|/analyses/ENCAN475YCD/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF253LIK|/files/ENCFF253LIK/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.829336. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF253LIK|/files/ENCFF253LIK/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.86. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR496PPU | float |
ATAC-seq_ENCSR496PPU |
ATAC-seq ENCSR496PPU [biosample_summary="Homo sapiens mucosa of descending colon tissue female adult (61 years)"]
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[1.3, 38.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF721WEZ.bed.gz | 6.61 MB | 915e031eacece6b6357af451533ab1f2 |
| ENCFF721WEZ.bed.gz.dvc | 101.0 B | 60620455f6bd98b9b22d2d051d232e72 |
| ENCFF721WEZ.tabix.bed.gz | 1.95 MB | b8a028ef05c150340252db75d808fc3f |
| ENCFF721WEZ.tabix.bed.gz.dvc | 107.0 B | b00f9e15f688af5aca87ea9bff03bb8d |
| ENCFF721WEZ.tabix.bed.gz.tbi | 518.38 KB | 8b383b60f3cb99e70412d48fea22220d |
| ENCFF721WEZ.tabix.bed.gz.tbi.dvc | 110.0 B | 2536255ec1656ef62da6173ae82449ab |
| genomic_resource.yaml | 2.62 KB | f0913ca29579874995e8eee10c290fcb |
| genomic_resource_original.yaml | 2.51 KB | b897b19e9571557a6e4b1d770bf95fc0 |
| statistics/ |