ATAC-seq_ENCSR492FJO
ATAC-seq ENCSR492FJO [biosample_summary="Homo sapiens GM18867"]
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| Id: | ATAC-seq/ENCSR492FJO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR492FJO [biosample_summary="Homo sapiens GM18867"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN537TFI|/analyses/ENCAN537TFI/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF500EBK|/files/ENCFF500EBK/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.731411. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF500EBK|/files/ENCFF500EBK/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.74. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR492FJO | float |
ATAC-seq_ENCSR492FJO |
ATAC-seq ENCSR492FJO [biosample_summary="Homo sapiens GM18867"]
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[1.35, 47.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF094CWB.bed.gz | 4.81 MB | 2af888c266754d29028419f484fafc0b |
| ENCFF094CWB.bed.gz.dvc | 101.0 B | 968030b635bcac970338f36b2db98be7 |
| ENCFF094CWB.tabix.bed.gz | 1.39 MB | 85fd6350dff87e3f88b71f2e7c4a3101 |
| ENCFF094CWB.tabix.bed.gz.dvc | 107.0 B | 97bbc10a0f450299d5e6f88e2d9ee19e |
| ENCFF094CWB.tabix.bed.gz.tbi | 519.42 KB | 5c755b6d260ff7f4ae3b724195c2df15 |
| ENCFF094CWB.tabix.bed.gz.tbi.dvc | 110.0 B | 79f57c9869185b557d2f90ae86c8eb85 |
| genomic_resource.yaml | 2.49 KB | bb7d4cc82e52a8ce7cbd35358d868b15 |
| genomic_resource_original.yaml | 2.42 KB | e84c1db64e259a2cb7dfbde61d9fc298 |
| statistics/ |