Resource
| Id | ATAC-seq/ENCSR491VKV |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR491VKV [biosample_summary="Homo sapiens heart right ventricle tissue male adult (73 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (73 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN635ECM|/analyses/ENCAN635ECM/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: According to ENCODE4 standards, overlap peaks files in ATAC-seq assays processed by the uniform processing pipeline should have FRiP (fraction of reads in called peak regions) scores > 0.3. FRiP scores 0.2-0.3 are acceptable, and < 0.2 are not compliant. {ENCFF993YBG|/files/ENCFF993YBG/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has a FRiP score of 0.17. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF691FEF|/files/ENCFF691FEF/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.844604. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF691FEF|/files/ENCFF691FEF/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.88. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR491VKV | float |
ATAC-seq_ENCSR491VKV |
ATAC-seq ENCSR491VKV [biosample_summary="Homo sapiens heart right ventricle tissue male adult (73 years)"]
|
 |
[1.31, 29.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 83577021 | 2.60% | 151811 |
| chr1 | 7931054 | 3.19% | 14292 |
| chr2 | 6773798 | 2.80% | 12488 |
| chr3 | 5313740 | 2.68% | 9817 |
| chr4 | 3609605 | 1.90% | 6798 |
| chr5 | 4584554 | 2.53% | 8613 |
| chr6 | 4717886 | 2.76% | 8844 |
| chr7 | 4360234 | 2.74% | 8020 |
| chr8 | 3741002 | 2.58% | 6974 |
| chr9 | 3650502 | 2.64% | 6478 |
| chr10 | 4334843 | 3.24% | 7947 |
| chr11 | 4334090 | 3.21% | 7650 |
| chr12 | 3952368 | 2.97% | 7186 |
| chr13 | 2087712 | 1.83% | 3943 |
| chr14 | 2575544 | 2.41% | 4618 |
| chr15 | 3069000 | 3.01% | 5574 |
| chr16 | 3015653 | 3.34% | 5301 |
| chr17 | 3842481 | 4.62% | 6573 |
| chr18 | 1911176 | 2.38% | 3645 |
| chr19 | 2979499 | 5.08% | 4837 |
| chr20 | 2349645 | 3.65% | 4244 |
| chr21 | 1141338 | 2.44% | 2018 |
| chr22 | 1921288 | 3.78% | 3334 |
| chrX | 1315960 | 0.84% | 2466 |
| chrY | 64049 | 0.11% | 151 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 151811 | 150 | 3243 | 550.53 | 452 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF993YBG.bed.gz | 5.48 MB | 8b4a171c5f1d0a1ad51785468d20984e |
| ENCFF993YBG.tabix.bed.gz | 1.65 MB | 2a487c6047993da7239b3888b2fdafae |
| ENCFF993YBG.tabix.bed.gz.tbi | 499.42 KB | 092d5f00fd4f03db2b83e7a82eb744bd |
| genomic_resource.yaml | 3.36 KB | 39b7e6119f0df32a88efb19bcb48eaad |
| statistics/ |