ATAC-seq_ENCSR491VKV
ATAC-seq ENCSR491VKV [biosample_summary="Homo sapiens heart right ventricle tissue male adult (73 years)"]
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| Id: | ATAC-seq/ENCSR491VKV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR491VKV [biosample_summary="Homo sapiens heart right ventricle tissue male adult (73 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (73 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN635ECM|/analyses/ENCAN635ECM/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: According to ENCODE4 standards, overlap peaks files in ATAC-seq assays processed by the uniform processing pipeline should have FRiP (fraction of reads in called peak regions) scores > 0.3. FRiP scores 0.2-0.3 are acceptable, and < 0.2 are not compliant. {ENCFF993YBG|/files/ENCFF993YBG/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has a FRiP score of 0.17. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF691FEF|/files/ENCFF691FEF/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.844604. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF691FEF|/files/ENCFF691FEF/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.88. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR491VKV | float |
ATAC-seq_ENCSR491VKV |
ATAC-seq ENCSR491VKV [biosample_summary="Homo sapiens heart right ventricle tissue male adult (73 years)"]
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[1.31, 29.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF993YBG.bed.gz | 5.48 MB | 8b4a171c5f1d0a1ad51785468d20984e |
| ENCFF993YBG.bed.gz.dvc | 101.0 B | 9c4cda588cf95865cf3d44983584d4d1 |
| ENCFF993YBG.tabix.bed.gz | 1.65 MB | 2a487c6047993da7239b3888b2fdafae |
| ENCFF993YBG.tabix.bed.gz.dvc | 107.0 B | 77d135526d2780892d5859994a169473 |
| ENCFF993YBG.tabix.bed.gz.tbi | 499.42 KB | 092d5f00fd4f03db2b83e7a82eb744bd |
| ENCFF993YBG.tabix.bed.gz.tbi.dvc | 110.0 B | edc3607f6b8ac066f923f57494524ec9 |
| genomic_resource.yaml | 3.36 KB | 39b7e6119f0df32a88efb19bcb48eaad |
| genomic_resource_original.yaml | 3.25 KB | b4a5616921300a2cd8b133816aca312d |
| statistics/ |