ATAC-seq_ENCSR487QSB
ATAC-seq ENCSR487QSB [biosample_summary="Homo sapiens GM18907"]
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| Id: | ATAC-seq/ENCSR487QSB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR487QSB [biosample_summary="Homo sapiens GM18907"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN857RGC|/analyses/ENCAN857RGC/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN857RGC|/analyses/ENCAN857RGC/} has in progress subobject document {8df5618e-1a16-4365-b65b-9d562defa74a|/documents/8df5618e-1a16-4365-b65b-9d562defa74a/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF292BTS|/files/ENCFF292BTS/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.853134. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF292BTS|/files/ENCFF292BTS/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.85. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR487QSB | float |
ATAC-seq_ENCSR487QSB |
ATAC-seq ENCSR487QSB [biosample_summary="Homo sapiens GM18907"]
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[1.38, 35.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF903NSQ.bed.gz | 4.62 MB | 1d798119953038aaf177c4de1d548123 |
| ENCFF903NSQ.bed.gz.dvc | 101.0 B | 576421a60a54760f1f0dbbfa670f4d1c |
| ENCFF903NSQ.tabix.bed.gz | 1.22 MB | 2b260d36e852f6cda358b06b6f13a6a3 |
| ENCFF903NSQ.tabix.bed.gz.dvc | 107.0 B | ce8991cf99e4c889d4dc454e0fcbd18f |
| ENCFF903NSQ.tabix.bed.gz.tbi | 457.17 KB | cb893b07927e0419ad72b98e4dea1a79 |
| ENCFF903NSQ.tabix.bed.gz.tbi.dvc | 110.0 B | d516d51cdb19979f36f8466b522b30ca |
| genomic_resource.yaml | 2.71 KB | c18680cf9780b7f9bf10a80154b78750 |
| genomic_resource_original.yaml | 2.64 KB | 412aef2128c2830dcd87f9163abcae28 |
| statistics/ |