Resource

Id ATAC-seq/ENCSR477YSUcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR477YSU [biosample_summary="Homo sapiens activated naive CD8-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours"]
Description
Labels
  • accession: ENCSR477YSU
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000502/
  • biosample_summary: Homo sapiens activated naive CD8-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours
  • date_created: 2021-09-23T04:29:42.526603+00:00
  • date_released: 2021-10-13
  • doi: 10.17989/ENCSR477YSU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR477YSU float

ATAC-seq_ENCSR477YSU
ATAC-seq ENCSR477YSU [biosample_summary="Homo sapiens activated naive CD8-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours"]
 HISTOGRAM FOR ATAC-seq_ENCSR477YSU [1.49, 36.4]
n
48,955,843
mean
7.7
sd
4.17

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 489558431.52% 101358
chr1 4877512 1.96% 9965
chr2 3991831 1.65% 8503
chr3 3124549 1.58% 6629
chr4 1957460 1.03% 4163
chr5 2422939 1.33% 5151
chr6 3012810 1.76% 6310
chr7 2440111 1.53% 5117
chr8 2106344 1.45% 4479
chr9 1964115 1.42% 4079
chr10 2335827 1.75% 4911
chr11 2374901 1.76% 4874
chr12 2441187 1.83% 4974
chr13 1193865 1.04% 2583
chr14 1661941 1.55% 3441
chr15 1639089 1.61% 3414
chr16 1718153 1.90% 3397
chr17 2355018 2.83% 4660
chr18 898201 1.12% 1987
chr19 2049098 3.50% 3721
chr20 1306915 2.03% 2731
chr21 643688 1.38% 1339
chr22 1022100 2.01% 2034
chrX 1342198 0.86% 2717
chrY 75991 0.13% 179
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 101358 150 2689 483 391
global segment-length histogram

Files

Filename Size md5
ENCFF026XCY.bed.gz 3.62 MB b630a15821d9a543b43e9c0c70b5b7bc
ENCFF026XCY.tabix.bed.gz 1.1 MB 8d9670a653ed8493a53de6c9f0b215db
ENCFF026XCY.tabix.bed.gz.tbi 412.55 KB edfbd87b90e5cbfc4dafa3f01111fb22
genomic_resource.yaml 2.0 KB a79008d24b8a5f1f941ac0c75a5024d7
statistics/