Resource
| Id | ATAC-seq/ENCSR476WNA |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR476WNA [biosample_summary="Homo sapiens ovary tissue female adult (47 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (47 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN600DLN|/analyses/ENCAN600DLN/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF053RTV|/files/ENCFF053RTV/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.82644. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF053RTV|/files/ENCFF053RTV/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.83. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR476WNA | float |
ATAC-seq_ENCSR476WNA |
ATAC-seq ENCSR476WNA [biosample_summary="Homo sapiens ovary tissue female adult (47 years)"]
|
 |
[1.31, 27.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 99335506 | 3.09% | 138290 |
| chr1 | 9230210 | 3.71% | 12968 |
| chr2 | 7762237 | 3.20% | 11055 |
| chr3 | 5585762 | 2.82% | 8116 |
| chr4 | 4190091 | 2.20% | 6086 |
| chr5 | 4987014 | 2.75% | 7206 |
| chr6 | 5409304 | 3.17% | 7822 |
| chr7 | 5249858 | 3.29% | 7332 |
| chr8 | 4316763 | 2.97% | 6158 |
| chr9 | 4375227 | 3.16% | 6048 |
| chr10 | 4920727 | 3.68% | 7123 |
| chr11 | 5201739 | 3.85% | 7075 |
| chr12 | 4475476 | 3.36% | 6344 |
| chr13 | 2425094 | 2.12% | 3520 |
| chr14 | 3135414 | 2.93% | 4394 |
| chr15 | 3342954 | 3.28% | 4728 |
| chr16 | 3693202 | 4.09% | 4843 |
| chr17 | 4824515 | 5.79% | 6248 |
| chr18 | 2174298 | 2.71% | 3226 |
| chr19 | 4363326 | 7.44% | 5176 |
| chr20 | 2845068 | 4.41% | 3972 |
| chr21 | 1509033 | 3.23% | 2049 |
| chr22 | 2477980 | 4.88% | 3180 |
| chrX | 2837556 | 1.82% | 3611 |
| chrY | 2658 | <0.01% | 10 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 138290 | 150 | 4071 | 718.31 | 587 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF871DTB.bed.gz | 5.63 MB | 7e6dd947b9b81cd4a56190ad9d38ac65 |
| ENCFF871DTB.tabix.bed.gz | 1.52 MB | 9d80c4ad611bbf69f18320f809b5e57a |
| ENCFF871DTB.tabix.bed.gz.tbi | 490.52 KB | 3a5c8c153f07bd8fb8644a56ad0d32d0 |
| genomic_resource.yaml | 2.55 KB | 309b518f5719c4815e84ddc0541c6f26 |
| statistics/ |