ATAC-seq_ENCSR476WNA
ATAC-seq ENCSR476WNA [biosample_summary="Homo sapiens ovary tissue female adult (47 years)"]
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| Id: | ATAC-seq/ENCSR476WNA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR476WNA [biosample_summary="Homo sapiens ovary tissue female adult (47 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (47 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN600DLN|/analyses/ENCAN600DLN/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF053RTV|/files/ENCFF053RTV/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.82644. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF053RTV|/files/ENCFF053RTV/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.83. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR476WNA | float |
ATAC-seq_ENCSR476WNA |
ATAC-seq ENCSR476WNA [biosample_summary="Homo sapiens ovary tissue female adult (47 years)"]
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[1.31, 27.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF871DTB.bed.gz | 5.63 MB | 7e6dd947b9b81cd4a56190ad9d38ac65 |
| ENCFF871DTB.bed.gz.dvc | 101.0 B | 961ce2c9281baf0b57a0d441d02bd850 |
| ENCFF871DTB.tabix.bed.gz | 1.52 MB | 9d80c4ad611bbf69f18320f809b5e57a |
| ENCFF871DTB.tabix.bed.gz.dvc | 107.0 B | 1fff77ffb80b3fc438f7e22cdcb7d658 |
| ENCFF871DTB.tabix.bed.gz.tbi | 490.52 KB | 3a5c8c153f07bd8fb8644a56ad0d32d0 |
| ENCFF871DTB.tabix.bed.gz.tbi.dvc | 110.0 B | 23e9839ad16f9135966383adda19a149 |
| genomic_resource.yaml | 2.55 KB | 309b518f5719c4815e84ddc0541c6f26 |
| genomic_resource_original.yaml | 2.46 KB | 1b7ef2a8472335b7d72480bc7b210f2d |
| statistics/ |