ATAC-seq_ENCSR476VJY
ATAC-seq ENCSR476VJY [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell male adult (21 years)"]
×
| Id: | ATAC-seq/ENCSR476VJY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR476VJY [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell male adult (21 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (21 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN669YRC|/analyses/ENCAN669YRC/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF895JAV|/files/ENCFF895JAV/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.703773. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF895JAV|/files/ENCFF895JAV/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.72. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR476VJY | float |
ATAC-seq_ENCSR476VJY |
ATAC-seq ENCSR476VJY [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell male adult (21 years)"]
|
|
[1.28, 46.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF035XXI.bed.gz | 2.48 MB | 4cb11015b2743b579f0cc33e2d76bf8e |
| ENCFF035XXI.bed.gz.dvc | 101.0 B | 8dbb8f9ed29de3578f3e337e202b8d10 |
| ENCFF035XXI.tabix.bed.gz | 697.56 KB | d55e02622c77bd4a2ca3fdf79873bb95 |
| ENCFF035XXI.tabix.bed.gz.dvc | 106.0 B | 09d46fcf3b84a42af935b4a32f14232e |
| ENCFF035XXI.tabix.bed.gz.tbi | 277.62 KB | a8aa745846265339e4d2e2794f8781f4 |
| ENCFF035XXI.tabix.bed.gz.tbi.dvc | 110.0 B | 37710bb4fa1825331eecd322d37cfdc0 |
| genomic_resource.yaml | 2.61 KB | c7be479ad17ba33e4428743827f76329 |
| genomic_resource_original.yaml | 2.5 KB | d43ff30522d53db4a5ce24bdf99d4fef |
| statistics/ |