Resource

Id ATAC-seq/ENCSR474XFVcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR474XFV [biosample_summary="Homo sapiens thyroid gland tissue male adult (54 years)"]
Description
Labels
  • accession: ENCSR474XFV
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002046/
  • biosample_summary: Homo sapiens thyroid gland tissue male adult (54 years)
  • date_created: 2016-11-01T03:16:11.262019+00:00
  • date_released: 2016-10-31
  • doi: 10.17989/ENCSR474XFV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR474XFV float

ATAC-seq_ENCSR474XFV
ATAC-seq ENCSR474XFV [biosample_summary="Homo sapiens thyroid gland tissue male adult (54 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR474XFV [1.31, 41.6]
n
71,285,951
mean
7.73
sd
4.13

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 712859512.22% 135536
chr1 6715406 2.70% 12613
chr2 5704932 2.36% 11014
chr3 4616582 2.33% 9007
chr4 3258691 1.71% 6381
chr5 3708628 2.04% 7212
chr6 4121808 2.41% 7881
chr7 3540754 2.22% 6822
chr8 3259974 2.25% 6365
chr9 3286255 2.37% 6226
chr10 3596284 2.69% 6933
chr11 3765051 2.79% 7015
chr12 3401733 2.55% 6458
chr13 1693150 1.48% 3342
chr14 2346974 2.19% 4461
chr15 2392394 2.35% 4511
chr16 2528092 2.80% 4616
chr17 3188020 3.83% 5791
chr18 1587718 1.98% 3125
chr19 2352645 4.01% 4013
chr20 1986906 3.08% 3811
chr21 831273 1.78% 1560
chr22 1506669 2.96% 2796
chrX 1782981 1.14% 3333
chrY 113031 0.20% 250
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 135536 150 2909 525.96 430
global segment-length histogram

Files

Filename Size md5
ENCFF682VUY.bed.gz 5.15 MB 92193823efca1b8695c799c66a46e083
ENCFF682VUY.tabix.bed.gz 1.48 MB ba65f9d5f97b12cf52394d74adb6b660
ENCFF682VUY.tabix.bed.gz.tbi 483.83 KB 059d281e36fb4449f6fea28b8c72e28e
genomic_resource.yaml 1.62 KB 0b174125ccb542532b7553fb57f2ba06
statistics/