ATAC-seq_ENCSR459PVP
ATAC-seq ENCSR459PVP [biosample_summary="Homo sapiens from a donor with amyotrophic lateral sclerosis; motor neuron"]
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| Id: | ATAC-seq/ENCSR459PVP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR459PVP [biosample_summary="Homo sapiens from a donor with amyotrophic lateral sclerosis; motor neuron"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (55 years) with amyotrophic lateral sclerosis output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN821PGU|/analyses/ENCAN821PGU/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF742KHO|/files/ENCFF742KHO/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with NRF value of 0.766666. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF742KHO|/files/ENCFF742KHO/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.78. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF243CTN|/files/ENCFF243CTN/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with NRF value of 0.769549. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF243CTN|/files/ENCFF243CTN/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.78. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR459PVP | float |
ATAC-seq_ENCSR459PVP |
ATAC-seq ENCSR459PVP [biosample_summary="Homo sapiens from a donor with amyotrophic lateral sclerosis; motor neuron"]
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[1.37, 42.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF951DOQ.bed.gz | 7.04 MB | 2f0272b04c855d6fe58518d1b37372ac |
| ENCFF951DOQ.bed.gz.dvc | 101.0 B | 3056d23471b4660cbc5523c08b8ab98a |
| ENCFF951DOQ.tabix.bed.gz | 2.0 MB | 3af27de863ae2aaaa855d25fc57d745b |
| ENCFF951DOQ.tabix.bed.gz.dvc | 107.0 B | 89201394c94104c04d7bb8a5aae6ef00 |
| ENCFF951DOQ.tabix.bed.gz.tbi | 595.29 KB | c1c6aa51ef2eb6a9f1ed28ef221da4ee |
| ENCFF951DOQ.tabix.bed.gz.tbi.dvc | 110.0 B | efdacd2478f05599407a26144ed62c6c |
| genomic_resource.yaml | 3.88 KB | d6c911303c1fe8daaa023f20f7569227 |
| genomic_resource_original.yaml | 3.76 KB | 068e08168948c30fc3bca55f040ee503 |
| statistics/ |