Resource
| Id | ATAC-seq/ENCSR454UTH |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR454UTH [biosample_summary="Homo sapiens GM19452"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN218COE|/analyses/ENCAN218COE/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR454UTH | float |
ATAC-seq_ENCSR454UTH |
ATAC-seq ENCSR454UTH [biosample_summary="Homo sapiens GM19452"]
|
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[1.57, 40.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 54408087 | 1.69% | 96194 |
| chr1 | 4845365 | 1.95% | 8469 |
| chr2 | 4726965 | 1.95% | 8533 |
| chr3 | 3847355 | 1.94% | 6946 |
| chr4 | 3202143 | 1.68% | 5815 |
| chr5 | 3360464 | 1.85% | 6067 |
| chr6 | 3696588 | 2.16% | 6588 |
| chr7 | 3002249 | 1.88% | 5420 |
| chr8 | 2764334 | 1.90% | 4996 |
| chr9 | 2189805 | 1.58% | 3846 |
| chr10 | 2646358 | 1.98% | 4680 |
| chr11 | 2605045 | 1.93% | 4581 |
| chr12 | 2680927 | 2.01% | 4716 |
| chr13 | 1510362 | 1.32% | 2732 |
| chr14 | 1668045 | 1.56% | 2903 |
| chr15 | 1530480 | 1.50% | 2679 |
| chr16 | 1518515 | 1.68% | 2524 |
| chr17 | 1807982 | 2.17% | 2989 |
| chr18 | 1289786 | 1.60% | 2358 |
| chr19 | 1396673 | 2.38% | 2135 |
| chr20 | 1134428 | 1.76% | 2033 |
| chr21 | 509413 | 1.09% | 877 |
| chr22 | 663075 | 1.30% | 1065 |
| chrX | 1667818 | 1.07% | 2953 |
| chrY | 143912 | 0.25% | 289 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 96194 | 150 | 2834 | 565.61 | 483 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF582GKW.bed.gz | 3.86 MB | b64e2fb7598d38e91f963731f06c87d4 |
| ENCFF582GKW.tabix.bed.gz | 1.05 MB | ca51d6319a6155eee3a927d837ceebe6 |
| ENCFF582GKW.tabix.bed.gz.tbi | 435.75 KB | b236ddf0cbf3bc18ec773ae066f660c4 |
| genomic_resource.yaml | 1.28 KB | 72b8e3161c98ca51400d704869fda569 |
| statistics/ |
