ATAC-seq_ENCSR452COS
ATAC-seq ENCSR452COS [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell male adult (50 years)"]
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| Id: | ATAC-seq/ENCSR452COS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR452COS [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell male adult (50 years)"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (50 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN518WTZ|/analyses/ENCAN518WTZ/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF738VXT|/files/ENCFF738VXT/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.869837. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF738VXT|/files/ENCFF738VXT/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.88. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF263BUK|/files/ENCFF263BUK/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.866411. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF263BUK|/files/ENCFF263BUK/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.88. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR452COS | float |
ATAC-seq_ENCSR452COS |
ATAC-seq ENCSR452COS [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell male adult (50 years)"]
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[1.2, 45.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF685MCV.bed.gz | 3.58 MB | 6b5b0afb9ce986cc04ae84b4ec2371da |
| ENCFF685MCV.bed.gz.dvc | 101.0 B | f873ccaf6627f4500a02fe5cf19e8758 |
| ENCFF685MCV.tabix.bed.gz | 1.07 MB | 985850748b0a8648b270d86d19f5fdf6 |
| ENCFF685MCV.tabix.bed.gz.dvc | 107.0 B | 299b14288de4c49843fce07a830978f9 |
| ENCFF685MCV.tabix.bed.gz.tbi | 401.49 KB | 50342a3a0401bbf40222aa11801311f2 |
| ENCFF685MCV.tabix.bed.gz.tbi.dvc | 110.0 B | e312d934dd34fc4de7c5a4957016a57b |
| genomic_resource.yaml | 3.83 KB | 4f07d4f5a6875407200be3b51e77703b |
| genomic_resource_original.yaml | 3.7 KB | af4f4028327ec368972c4c077a8c0fd1 |
| statistics/ |