ATAC-seq_ENCSR451JSB
ATAC-seq ENCSR451JSB [biosample_summary="Homo sapiens heart left ventricle tissue female adult (56 years)"]
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| Id: | ATAC-seq/ENCSR451JSB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR451JSB [biosample_summary="Homo sapiens heart left ventricle tissue female adult (56 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (56 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN599GXH|/analyses/ENCAN599GXH/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: According to ENCODE4 standards, overlap peaks files in ATAC-seq assays processed by the uniform processing pipeline should have FRiP (fraction of reads in called peak regions) scores > 0.3. FRiP scores 0.2-0.3 are acceptable, and < 0.2 are not compliant. {ENCFF343GGF|/files/ENCFF343GGF/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has a FRiP score of 0.18. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF987YOH|/files/ENCFF987YOH/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.875307. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF987YOH|/files/ENCFF987YOH/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.89. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR451JSB | float |
ATAC-seq_ENCSR451JSB |
ATAC-seq ENCSR451JSB [biosample_summary="Homo sapiens heart left ventricle tissue female adult (56 years)"]
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[1.38, 27.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF343GGF.bed.gz | 5.26 MB | 5e9d032ba7968de5fcecc0d02b1f605b |
| ENCFF343GGF.bed.gz.dvc | 101.0 B | 4fed2f11d7f83989801a8e7cb62b33f4 |
| ENCFF343GGF.tabix.bed.gz | 1.59 MB | d2a8f5096bb12c5f62ce0d66d46b7101 |
| ENCFF343GGF.tabix.bed.gz.dvc | 107.0 B | 77b2da84e82b5801ee063640d1f95937 |
| ENCFF343GGF.tabix.bed.gz.tbi | 474.31 KB | 27d3dca3a0e7b3a510eb6fab16ba73bc |
| ENCFF343GGF.tabix.bed.gz.tbi.dvc | 110.0 B | f89a876eb2d437629284de2a562f3486 |
| genomic_resource.yaml | 3.36 KB | 683b3b5f78e314f3e579fb662c89f95c |
| genomic_resource_original.yaml | 3.26 KB | b55903f48c89e0e181bd2574fc6fa9ca |
| statistics/ |