ATAC-seq_ENCSR442OAV
ATAC-seq ENCSR442OAV [biosample_summary="Homo sapiens GM18517"]
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| Id: | ATAC-seq/ENCSR442OAV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR442OAV [biosample_summary="Homo sapiens GM18517"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN552KAR|/analyses/ENCAN552KAR/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF697VLB|/files/ENCFF697VLB/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.856358. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF697VLB|/files/ENCFF697VLB/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.89. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR442OAV | float |
ATAC-seq_ENCSR442OAV |
ATAC-seq ENCSR442OAV [biosample_summary="Homo sapiens GM18517"]
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[1.53, 29.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF481DKV.bed.gz | 3.6 MB | 3c415777e5c662b6e21dc409608a9977 |
| ENCFF481DKV.bed.gz.dvc | 101.0 B | de50343829fefce2d3d92aa643d643ee |
| ENCFF481DKV.tabix.bed.gz | 1017.0 KB | ce8b02efd93397117966debae7f08957 |
| ENCFF481DKV.tabix.bed.gz.dvc | 107.0 B | 2aa37bdc9d264b057f7a16efe7cf3bc4 |
| ENCFF481DKV.tabix.bed.gz.tbi | 418.42 KB | 9c373f010714e13e5c4f71b30252e40f |
| ENCFF481DKV.tabix.bed.gz.tbi.dvc | 110.0 B | a1ef59d5051bacece2c5a421a8c5b75a |
| genomic_resource.yaml | 2.49 KB | ecc3d39e8aafe320ac387d3934a048b5 |
| genomic_resource_original.yaml | 2.42 KB | 8302d8c0e915db628363776431b78d71 |
| statistics/ |