Resource
| Id | ATAC-seq/ENCSR442OAV |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR442OAV [biosample_summary="Homo sapiens GM18517"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN552KAR|/analyses/ENCAN552KAR/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF697VLB|/files/ENCFF697VLB/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.856358. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF697VLB|/files/ENCFF697VLB/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.89. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR442OAV | float |
ATAC-seq_ENCSR442OAV |
ATAC-seq ENCSR442OAV [biosample_summary="Homo sapiens GM18517"]
|
 |
[1.53, 29.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 50712603 | 1.58% | 90378 |
| chr1 | 4534291 | 1.82% | 7959 |
| chr2 | 4407086 | 1.82% | 8043 |
| chr3 | 3579930 | 1.81% | 6594 |
| chr4 | 3033341 | 1.59% | 5686 |
| chr5 | 3135971 | 1.73% | 5748 |
| chr6 | 3540732 | 2.07% | 6369 |
| chr7 | 2897948 | 1.82% | 5243 |
| chr8 | 2539846 | 1.75% | 4642 |
| chr9 | 1963358 | 1.42% | 3507 |
| chr10 | 2354633 | 1.76% | 4219 |
| chr11 | 2387520 | 1.77% | 4235 |
| chr12 | 2557347 | 1.92% | 4507 |
| chr13 | 1424711 | 1.25% | 2608 |
| chr14 | 1484877 | 1.39% | 2568 |
| chr15 | 1384518 | 1.36% | 2415 |
| chr16 | 1352439 | 1.50% | 2188 |
| chr17 | 1692755 | 2.03% | 2759 |
| chr18 | 1187444 | 1.48% | 2205 |
| chr19 | 1334643 | 2.28% | 1978 |
| chr20 | 1014981 | 1.57% | 1796 |
| chr21 | 503279 | 1.08% | 854 |
| chr22 | 604817 | 1.19% | 962 |
| chrX | 1795349 | 1.15% | 3290 |
| chrY | 787 | <0.01% | 3 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 90378 | 150 | 2824 | 561.12 | 473 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF481DKV.bed.gz | 3.6 MB | 3c415777e5c662b6e21dc409608a9977 |
| ENCFF481DKV.tabix.bed.gz | 1017.0 KB | ce8b02efd93397117966debae7f08957 |
| ENCFF481DKV.tabix.bed.gz.tbi | 418.42 KB | 9c373f010714e13e5c4f71b30252e40f |
| genomic_resource.yaml | 2.49 KB | ecc3d39e8aafe320ac387d3934a048b5 |
| statistics/ |