ATAC-seq_ENCSR425WQW
ATAC-seq ENCSR425WQW [biosample_summary="Homo sapiens GM19324"]
×
| Id: | ATAC-seq/ENCSR425WQW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR425WQW [biosample_summary="Homo sapiens GM19324"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN677TFR|/analyses/ENCAN677TFR/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: According to ENCODE4 standards, overlap peaks files in ATAC-seq assays processed by the uniform processing pipeline should have FRiP (fraction of reads in called peak regions) scores > 0.3. FRiP scores 0.2-0.3 are acceptable, and < 0.2 are not compliant. {ENCFF968BIR|/files/ENCFF968BIR/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has a FRiP score of 0.18. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF668HHR|/files/ENCFF668HHR/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.866817. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF668HHR|/files/ENCFF668HHR/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.87. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR425WQW | float |
ATAC-seq_ENCSR425WQW |
ATAC-seq ENCSR425WQW [biosample_summary="Homo sapiens GM19324"]
|
|
[1.47, 26.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF968BIR.bed.gz | 3.5 MB | ae7c1ec96c47955d589874034268c840 |
| ENCFF968BIR.bed.gz.dvc | 101.0 B | 52837399558de21efdef5c971e9c3770 |
| ENCFF968BIR.tabix.bed.gz | 986.37 KB | c4c50e9288d42cd4eb4c9da68638df6b |
| ENCFF968BIR.tabix.bed.gz.dvc | 107.0 B | 618b1ad14df28912cca0bdc45f036ce9 |
| ENCFF968BIR.tabix.bed.gz.tbi | 429.03 KB | f90202356c0c9be3c1d60e30de8d2681 |
| ENCFF968BIR.tabix.bed.gz.tbi.dvc | 110.0 B | 9f738d349f1850a2200212192f5b96b8 |
| genomic_resource.yaml | 2.91 KB | b8755bde22e1fa33c526c637a7d77642 |
| genomic_resource_original.yaml | 2.84 KB | 37a1aef3f41a980a348e84781c9a1f59 |
| statistics/ |