ATAC-seq_ENCSR422SUG
ATAC-seq ENCSR422SUG [biosample_summary="Homo sapiens MCF-7"]
×
| Id: | ATAC-seq/ENCSR422SUG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR422SUG [biosample_summary="Homo sapiens MCF-7"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN088EGP|/analyses/ENCAN088EGP/} has in progress subobject document {9f6b7347-450e-41a0-8e20-62425f71ce55|/documents/9f6b7347-450e-41a0-8e20-62425f71ce55/} audit_internal_action: Released analysis {ENCAN088EGP|/analyses/ENCAN088EGP/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF607OSL|/files/ENCFF607OSL/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.821827. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF607OSL|/files/ENCFF607OSL/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.83. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF772EFK|/files/ENCFF772EFK/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.836058. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF772EFK|/files/ENCFF772EFK/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.84. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR422SUG | float |
ATAC-seq_ENCSR422SUG |
ATAC-seq ENCSR422SUG [biosample_summary="Homo sapiens MCF-7"]
|
|
[1.34, 42.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF821OEF.bed.gz | 5.67 MB | c0aa2f211c56fb5716e580ea3644a9a7 |
| ENCFF821OEF.bed.gz.dvc | 101.0 B | 39df7e1b5b302b3d296b314b63215fad |
| ENCFF821OEF.tabix.bed.gz | 1.61 MB | 818fa48d0809259a8ec27ac8181f0fec |
| ENCFF821OEF.tabix.bed.gz.dvc | 107.0 B | 998b62e35e01bff883e3b789b4a6c8e7 |
| ENCFF821OEF.tabix.bed.gz.tbi | 548.12 KB | 66529ceaf349ff75bd8a922535c0e8a4 |
| ENCFF821OEF.tabix.bed.gz.tbi.dvc | 110.0 B | c7f69f79bce73f423a8a1597ea86885c |
| genomic_resource.yaml | 3.9 KB | b034973b171b64ea249a7c73cf93e70b |
| genomic_resource_original.yaml | 3.83 KB | 42c5683554f48ba24ab03dc4f8247aaa |
| statistics/ |