ATAC-seq_ENCSR422RPD
ATAC-seq ENCSR422RPD [biosample_summary="Homo sapiens GM21717"]
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| Id: | ATAC-seq/ENCSR422RPD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR422RPD [biosample_summary="Homo sapiens GM21717"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN793HZA|/analyses/ENCAN793HZA/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF496QAW|/files/ENCFF496QAW/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.876442. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF496QAW|/files/ENCFF496QAW/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.90. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR422RPD | float |
ATAC-seq_ENCSR422RPD |
ATAC-seq ENCSR422RPD [biosample_summary="Homo sapiens GM21717"]
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[1.41, 28.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF387RGN.bed.gz | 3.93 MB | 97cd6c5cc7405c779aa4660f30fc8116 |
| ENCFF387RGN.bed.gz.dvc | 101.0 B | f56a2b7b2f5a4fad496948963833c930 |
| ENCFF387RGN.tabix.bed.gz | 1.13 MB | 7d1e622ab14aeef85d7a7413920baa86 |
| ENCFF387RGN.tabix.bed.gz.dvc | 107.0 B | 6a4aea8a05d02d0bf39d3d187ac5e099 |
| ENCFF387RGN.tabix.bed.gz.tbi | 460.76 KB | 6456e4e0778d2507c09efb0d3c593474 |
| ENCFF387RGN.tabix.bed.gz.tbi.dvc | 110.0 B | 73a447ca6df9f69bbebbf8e39a2a27fb |
| genomic_resource.yaml | 2.49 KB | 79b4e46a560dbece6cba84bd9f04cb22 |
| genomic_resource_original.yaml | 2.42 KB | 17c42dde153cbd6da8012167c1764ada |
| statistics/ |