ATAC-seq_ENCSR420RVW
ATAC-seq ENCSR420RVW [biosample_summary="Homo sapiens HG02870"]
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| Id: | ATAC-seq/ENCSR420RVW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR420RVW [biosample_summary="Homo sapiens HG02870"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN880JVR|/analyses/ENCAN880JVR/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF358GWK|/files/ENCFF358GWK/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.766833. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF358GWK|/files/ENCFF358GWK/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.78. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR420RVW | float |
ATAC-seq_ENCSR420RVW |
ATAC-seq ENCSR420RVW [biosample_summary="Homo sapiens HG02870"]
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[1.45, 40.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF730TRQ.bed.gz | 4.14 MB | 0727a8991fe8d8c62edc4af6dd53585d |
| ENCFF730TRQ.bed.gz.dvc | 101.0 B | 11c7d8a0561c562a3d0010bb42fdeec2 |
| ENCFF730TRQ.tabix.bed.gz | 1.23 MB | 50b8d810770f47313f2e312eeb110967 |
| ENCFF730TRQ.tabix.bed.gz.dvc | 107.0 B | 63b31c9004764b811ee379e944cf2281 |
| ENCFF730TRQ.tabix.bed.gz.tbi | 475.82 KB | 6dc57a23d9fedcc8ddb0daf06f4d4ee0 |
| ENCFF730TRQ.tabix.bed.gz.tbi.dvc | 110.0 B | e47ade12481a17a15f01080c27f4c006 |
| genomic_resource.yaml | 2.49 KB | 73438defacab578a27206ece2c59221c |
| genomic_resource_original.yaml | 2.42 KB | 3b713d098f0345c52f695f3dd730e457 |
| statistics/ |